PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g039010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 320aa MW: 34976.9 Da PI: 9.0264

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g039010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.1	9.1e-39	37	96	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++lkcprC+s ntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvP+Ggg+rk kks Csa18g039010.1 37 DQQTLKCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS 96 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-34	24	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.5E-33	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.432	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MSSHTNLPSP KPVPKTDNRI SGTSQTKKPP SSSVAQDQQT LKCPRCNSPN TKFCYYNNYS 60 LSQPRHFCKS CRRYWTRGGA LRNVPIGGGC RKTKKSIKPS TSSMNAVLPS SSSSSQRFFS 120 SIMDDSSKFF PPPTTMDFQL AGLSLNKIND LQLLNNQEVL DLRPMISSGR ENTPVDVGSG 180 LSLMGFGDYN SNHSPTGFTT AGASDGNLAS SIETLSCLNQ DLHWRLQQQR MAMLFGNSKE 240 ETVVVERPQP ILYRNLEIVN SSSPSSPTKK GDNQTEWYFG NNSDNEGVIS NNGNTGGGGS 300 EWNNGIQAWT DLNHYNALP*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g039010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026639	0.0	AB026639.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K21L13.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010484340.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
Swissprot	Q9LSL6	0.0	DOF57_ARATH; Dof zinc finger protein DOF5.7
TrEMBL	A0A384KZI0	0.0	A0A384KZI0_ARATH; SCAP1
TrEMBL	C0SVW2	0.0	C0SVW2_ARATH; Uncharacterized protein At5g65590 (Fragment)
STRING	XP_010484340.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4950	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	0.0	Dof family protein

Publications ? help Back to Top
Castorina G,Fox S,Tonelli C,Galbiati M,Conti L A novel role for STOMATAL CARPENTER 1 in stomata patterning. BMC Plant Biol., 2016. 16(1): p. 172 [PMID:27484174]