PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g038690.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 352aa MW: 39581.7 Da PI: 7.2835

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g038690.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.2	1.9e-05	232	259	8	35
HHHHHHHHHHHHHHHHHCTSCCC...TT CS HLH 8 rErrRRdriNsafeeLrellPkaskaps 35 Er R +riN+ + +L ellP+ + ++ Csa18g038690.1 232 SERDRKQRINDNIKKLGELLPQKVEDDH 259 6********************9764443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.8.10	1.2E-5	4	36	No hit	No description
CDD	cd14279	6.95E-4	8	36	No hit	No description
CDD	cd00083	1.49E-4	219	277	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.5E-6	228	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-6	230	284	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MGFRPVYQSL TELFPQIDPK ILRVVAIEHQ HDVDEAASLV ISDMCSFSSP NSTQPLNKNK 60 SKVSDDLPYL KAEPDMQTDD GCLSLSQWLQ PSKLPHSYLA LLNEESTPDV KPPPDFLVEK 120 VVLPDRGEAT GVGGGIRNMY SFDNVGSSSL VKPSIRVQSR TNNELSGSSS KVPVVRRSSR 180 KSVQPWSPDY SEKLRSWKKR NNNNRDFPHF FSKDRAVPSK QSKRNNSQCY ASERDRKQRI 240 NDNIKKLGEL LPQKVEDDHP ELTLNAIIDH VKLLQLQMKE LSRSRLGGEP VSRPMTFIEG 300 YGHYIHHEQT MTKSLEEVME DLLTNDFDAA ANLLESKGLY LMPLSTAQGS C*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MGFRPVYQSL TELFPQIDPK ILRVVAIEHQ HDVDEAASLV ISDMCSFSSP NSTQPLNKNK  60
SKVSDDLPYL KAEPDMQTDD GCLSLSQWLQ PSKLPHSYLA LLNEESTPDV KPPPDFLVEK  120
VVLPDRGEAT GVGGGIRNMY SFDNVGSSSL VKPSIRVQSR TNNELSGSSS KVPVVRRSSR  180
KSVQPWSPDY SEKLRSWKKR NNNNRDFPHF FSKDRAVPSK QSKRNNSQCY ASERDRKQRI  240
NDNIKKLGEL LPQKVEDDHP ELTLNAIIDH VKLLQLQMKE LSRSRLGGEP VSRPMTFIEG  300
YGHYIHHEQT MTKSLEEVME DLLTNDFDAA ANLLESKGLY LMPLSTAQGS C*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g038690.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010484296.1	0.0	PREDICTED: uncharacterized protein LOC104762664 isoform X1
TrEMBL	R0GAC4	0.0	R0GAC4_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010484296.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12956	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	5e-15	LJRHL1-like 2