PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g037670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 305aa    MW: 33597.4 Da    PI: 4.2576
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g037670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM83.54.2e-2678154129
             NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     ++ +wyfF++r+kky++g ++nr+t+ gyWk+tg+d++vl  ++++vg  +tLv++ g++p+g +tdWv+heyrle
  Csa18g037670.1   7 GDLKWYFFCPREKKYPKGGKANRSTECGYWKTTGRDRDVLY-NNQVVGKIRTLVYHFGKTPRGDRTDWVIHEYRLE 81 
                     5679*************************************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.5041103IPR003441NAC domain
SuperFamilySSF1019411.57E-326103IPR003441NAC domain
PfamPF023652.3E-121180IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
KSCLGTGDLK WYFFCPREKK YPKGGKANRS TECGYWKTTG RDRDVLYNNQ VVGKIRTLVY  60
HFGKTPRGDR TDWVIHEYRL EDQVLAQKNV PQDSYVLCVL FKKNGLGPRH GSQYGAPYKD  120
EDWSGDEEED TQHLVAIPSA VNAGPCPGPS KETSLVATTS QSHAPKDCFT AGVISESCIS  180
DVPPLTATVL PPLTSDVVGY APMSSTPLLE VPPDDDEELN SMLDVFSVVN DECLLFDDFD  240
YQNEVRDVPG VYVNEEEAPV ILGDGNFSGM FDLSDEQVME MENLIQPPTP PPGAQASNPY  300
DSRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-24710469166NO APICAL MERISTEM PROTEIN
1ut4_B3e-24710469166NO APICAL MERISTEM PROTEIN
1ut7_A3e-24710469166NO APICAL MERISTEM PROTEIN
1ut7_B3e-24710469166NO APICAL MERISTEM PROTEIN
4dul_A3e-24710469166NAC domain-containing protein 19
4dul_B3e-24710469166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g037670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0118221e-154BT011822.1 Arabidopsis thaliana At5g49950 mRNA sequence.
GenBankBT0155831e-154BT015583.1 Arabidopsis thaliana At5g64060 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485308.10.0PREDICTED: NAC domain-containing protein 82-like, partial
SwissprotQ9FY826e-87NAC82_ARATH; NAC domain-containing protein 82
TrEMBLR0GQY90.0R0GQY9_9BRAS; Uncharacterized protein
STRINGXP_010485308.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36922562
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-139NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]