PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g037000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NF-YC | ||||||||
Protein Properties | Length: 256aa MW: 27371.6 Da PI: 4.7457 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.4 | 6.6e-56 | 58 | 162 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl Csa18g037000.1 58 QLQMFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 152 89*****998899********************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivpr+e+k Csa18g037000.1 153 VDIVPREEIK 162 ******9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.38E-34 | 51 | 152 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-20 | 80 | 143 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 8.2E-37 | 81 | 158 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDNNNNNQPP PPTSAYPPNS AVTTVIPPPP SGSTSIIAGG GGGGATYHHL LQQQQQQQLQ 60 MFWTYQRQEI EQVNDFKNHQ LPLARIKKIM KADEDVRMIS AEAPILFAKA CELFILELTI 120 RSWLHAEENK RRTLQKNDIA AAITRTDIFD FLVDIVPREE IKEEEDAASA AALGGGMVPQ 180 AASGVPYYYP PMGQPAVPGG MMIGRPAMDP SGVYAQPPSQ AWQSVWQNSA GGGGGDDVSY 240 GSGGSSGHGN LDSQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-55 | 66 | 158 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 136 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g037000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB007649 | 0.0 | AB007649.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLE2. | |||
GenBank | AK317038 | 0.0 | AK317038.1 Arabidopsis thaliana AT5G63470 mRNA, complete cds, clone: RAFL19-94-G17. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010484088.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q9FMV5 | 1e-141 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A384KX14 | 1e-139 | A0A384KX14_ARATH; NF-YC4 | ||||
TrEMBL | B9DG64 | 1e-139 | B9DG64_ARATH; AT5G63470 protein | ||||
STRING | XP_010484088.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 1e-118 | nuclear factor Y, subunit C4 |