PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g036040.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 278aa MW: 30214.5 Da PI: 6.0639 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.5 | 3.7e-11 | 160 | 206 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++++P + +k Ka +L + ++YI+sLq Csa18g036040.2 160 HSLAERARREKISEKMTALQDIIPGC----NKIIGKALVLDEIINYIQSLQ 206 999***********************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.15E-17 | 153 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.66E-10 | 153 | 210 | No hit | No description |
PROSITE profile | PS50888 | 15.18 | 155 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-17 | 156 | 220 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-8 | 160 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.9E-10 | 161 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MDPPLVNDSS FSAANPSSYT LSEIWPFPVN DAVRSGLRLA VNSGRVFTRS EHKDLSAAEE 60 STVTDLTAGW GGRKTKDLNS EDDSSKMVSS SSSGNELKES GDKKRKLCGS ESGNGDCSMR 120 PEGETSSGGG SKATEQKNKP EPPKDYIHVR ARRGQATDRH SLAERARREK ISEKMTALQD 180 IIPGCNKIIG KALVLDEIIN YIQSLQRQVE FLSMKLEVVN SGASTGPTIG VFPSGDLGTL 240 PIDVHRTIYE QQEANEARGT QPEWLHMQVD GNYNRTT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 96 | 105 | LKESGDKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g036040.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY072104 | 0.0 | AY072104.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds. | |||
GenBank | AY084578 | 0.0 | AY084578.1 Arabidopsis thaliana clone 112281 mRNA, complete sequence. | |||
GenBank | AY123023 | 0.0 | AY123023.1 Arabidopsis thaliana unknown protein (At5g62610) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010483975.1 | 0.0 | PREDICTED: transcription factor bHLH79-like | ||||
Swissprot | Q9LV17 | 0.0 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | D7MMC6 | 0.0 | D7MMC6_ARALL; Basic helix-loop-helix family protein | ||||
TrEMBL | R0GRI4 | 0.0 | R0GRI4_9BRAS; Uncharacterized protein | ||||
STRING | XP_010483975.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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