PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g035470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 240aa    MW: 26947.6 Da    PI: 5.8233
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g035470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.3e-141767148
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +lvd  +  G+g   +W+ +++  g++R++k+c++rw +yl
   Csa18g035470.1 17 KGPWTVEEDGKLVDFLRIRGSGggwCWRDVPKLAGLRRCGKSCRLRWTNYL 67
                     79***********************************************97 PP
2Myb_DNA-binding55.21.6e-1773117147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +++eE +l++d++++lG++ W++Ia +++ gRt++++k++w+++
   Csa18g035470.1  73 RGLFSEEEIQLIIDLHARLGNR-WSKIAVELP-GRTDNDIKNYWNTH 117
                      7889******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-18869IPR009057Homeodomain-like
PROSITE profilePS5129412.4771267IPR017930Myb domain
SuperFamilySSF466897.11E-2514114IPR009057Homeodomain-like
SMARTSM007177.4E-71669IPR001005SANT/Myb domain
PfamPF002493.9E-121767IPR001005SANT/Myb domain
CDDcd001671.76E-51967No hitNo description
PROSITE profilePS5129426.00568122IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-2670123IPR009057Homeodomain-like
SMARTSM007177.7E-1772120IPR001005SANT/Myb domain
PfamPF002497.6E-1673117IPR001005SANT/Myb domain
CDDcd001671.57E-1276118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MIMGGRKPCC DEVGLRKGPW TVEEDGKLVD FLRIRGSGGG WCWRDVPKLA GLRRCGKSCR  60
LRWTNYLRPD LKRGLFSEEE IQLIIDLHAR LGNRWSKIAV ELPGRTDNDI KNYWNTHIKR  120
KLIRMGIDPN THRRFDQQKV NEEEKVLKVN SPKPPSQPEV VVPVVLQNDT SAGNLNELAD  180
VDGDDQPWSF LMENDGGGAG ELTMLLSGNI TSSCSSSSSL WLKYGDLGYE DLELGCFDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-271512225128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00577DAPTransfer from AT5G62320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g035470.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1990260.0AF199026.2 Arabidopsis thaliana putative transcription factor (MYB99) mRNA, complete cds.
GenBankAY5196440.0AY519644.1 Arabidopsis thaliana MYB transcription factor (At5g62320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483899.11e-176PREDICTED: protein ODORANT1-like
SwissprotQ9C7U71e-67MYB20_ARATH; Transcription factor MYB20
TrEMBLR0F0I21e-143R0F0I2_9BRAS; Uncharacterized protein
STRINGXP_010483899.11e-175(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62320.11e-129myb domain protein 99
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]