PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g035400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ARF | ||||||||
Protein Properties | Length: 857aa MW: 95399.4 Da PI: 6.5173 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.5 | 1.1e-22 | 161 | 262 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++ +++a+e+ + + + +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + ++ Csa18g035400.1 161 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 252 99*****************************7333.34459************************************************..4499 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+v+v+r+ Csa18g035400.1 253 GELRVGVRRA 262 99*****996 PP | |||||||
2 | Auxin_resp | 121.1 | 8.1e-40 | 287 | 369 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+st+++F+v+Y+Pr+s+seF+v+++++++++k+++s+GmRfkm+fe+e+++e+r++Gt+vg++d+dp+rWp+SkWrsLk Csa18g035400.1 287 AWHAISTGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPEQRFTGTIVGTEDSDPTRWPKSKWRSLK 369 89*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-40 | 157 | 276 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.01E-40 | 157 | 290 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.45E-20 | 159 | 261 | No hit | No description |
PROSITE profile | PS50863 | 11.42 | 161 | 263 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-20 | 161 | 262 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-22 | 161 | 263 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.5E-37 | 287 | 369 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 9.0E-10 | 707 | 815 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 9.32E-12 | 728 | 807 | No hit | No description |
PROSITE profile | PS51745 | 25.174 | 730 | 814 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 857 aa Download sequence Send to blast |
MASSEVSMKG NRGGENFSSS AFTDPKETRN VSVPGEGQNC HSTRSERAVD PEAALYRELW 60 HACAGPLVTV PRQDDRVFYF PQGHIEQVEA STNQAAEQQM PLYDLPSKLL CRVINVDLKA 120 EADTDEVYAQ ITLVPEANQD ENAIEKEAPP PPPPRFQVHS FCKTLTASDT STHGGFSVLR 180 RHADECLPPL DMSRQPPTQE LVAKDLHANE WRFRHIFRGQ PRRHLLQSGW SVFVSSKRLV 240 AGDAFIFLRG ENGELRVGVR RAMRQQGNVP SSVISSHSMH LGVLATAWHA ISTGTMFTVY 300 YKPRTSPSEF IVPFDQYMES VKNNYSIGMR FKMRFEGEEA PEQRFTGTIV GTEDSDPTRW 360 PKSKWRSLKV RWDETSSIPR PDRVSPWKIE PALAPPALSP VPMPRPKRPR SNIAPSSPDS 420 SILTREGTAK ANMDPLPASG LSRVLQGQEY STLRTKHTES VECDAPENSV VWQSSADDDK 480 VDVVSGSRRY GSENWMSSAR HEPTYTDLLS GFGTNIDPPH GQRIPFYDHS SSPSMPAKKI 540 SSDPEGKFDY LANQWQMMHS GLSLKLHESP KVPSASDTSF QGRGNGKYSE YPVLNGLSTE 600 NTGGNWPIRP RALNYFEEVV QAQAQAQARE QVTKQSMTIQ EETAKSRDGN CRLFGIPLNN 660 NMNGTDSSLY QRNNLNDAAG LTQIASPKVQ DLSDQSKGSK STNEHREQGG PFQTNYPHPK 720 DAHAKTSSSR SCTKVHKQGI ALGRSVDLSK FQNYEELIAE LDRLFEFNGE LMAPKKDWLI 780 VYTDDENDMM LVGDDPWQEF CCMVRKIFIY TKEEVRKMNP GTLSCRSEEE AVVGEGSDAK 840 DAKSASNPSL SSAGNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-180 | 54 | 391 | 18 | 354 | Auxin response factor 1 |
4ldw_A | 1e-180 | 54 | 391 | 18 | 354 | Auxin response factor 1 |
4ldw_B | 1e-180 | 54 | 391 | 18 | 354 | Auxin response factor 1 |
4ldx_A | 1e-180 | 54 | 391 | 18 | 354 | Auxin response factor 1 |
4ldx_B | 1e-180 | 54 | 391 | 18 | 354 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g035400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK221252 | 0.0 | AK221252.1 Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds, clone: RAFL24-07-O11. | |||
GenBank | AK221254 | 0.0 | AK221254.1 Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds, clone: RAFL24-09-L23. | |||
GenBank | AK221274 | 0.0 | AK221274.1 Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds, clone: RAFL24-16-M02. | |||
GenBank | AK221305 | 0.0 | AK221305.1 Arabidopsis thaliana mRNA for ARF1-binding protein, complete cds, clone: RAFL24-31-F22. | |||
GenBank | BT000784 | 0.0 | BT000784.1 Arabidopsis thaliana clone RAFL07-10-G12 (R10939) auxin response factor (At5g62000) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010483894.1 | 0.0 | PREDICTED: auxin response factor 2 | ||||
Swissprot | Q94JM3 | 0.0 | ARFB_ARATH; Auxin response factor 2 | ||||
TrEMBL | A0A178UUC3 | 0.0 | A0A178UUC3_ARATH; Auxin response factor | ||||
STRING | XP_010483894.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5348 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |