PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g034350.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 364aa MW: 40760.5 Da PI: 7.0482

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g034350.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	95.2	1.3e-29	62	173	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ssssasec 73 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak +++l+ + s Csa18g034350.1 62 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEEAKDDVDKLPPLqfphgfnqmypnlmfgnsgfgespS------- 149 78*************************************************************5555554444444444443332220....... PP TCP 74 eaesssssasnsssg............k 89 s ss+ +++s+ + Csa18g034350.1 150 ----STSSTTFPGSNlgflenwdlggsS 173 ....222222222223344444444431 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.7E-27	63	183	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.301	63	121	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MRSRECDEEE IHAKQEGDSN QNHQVNLNHM LQQQQPSTVS SSRQWTSAFR NPRIVRVSRT 60 FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVIDWL LEEAKDDVDK 120 LPPLQFPHGF NQMYPNLMFG NSGFGESPSS TSSTTFPGSN LGFLENWDLG GSSRTRSRIT 180 DTTTTHRESF DLDKGKWIKH DENSNQDHQG FNHQHFPLTN PYNNTSSYYN LGHLQQSLEQ 240 SGNNVTVAIS NVAANNNNNL NLPPPSSSAP RDGSQLFFGP TPPAMSSLFP TYPSFLGASH 300 HHNHHHHQVV DGAGHLQLFS SNSNTATQQQ MMTGNTSLIR PFHHLMSSNH DTDRHSSDND 360 SDS*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MRSRECDEEE IHAKQEGDSN QNHQVNLNHM LQQQQPSTVS SSRQWTSAFR NPRIVRVSRT  60
FGGKDRHSKV CTVRGLRDRR IRLSVPTAIQ LYDLQDRLGL SQPSKVIDWL LEEAKDDVDK  120
LPPLQFPHGF NQMYPNLMFG NSGFGESPSS TSSTTFPGSN LGFLENWDLG GSSRTRSRIT  180
DTTTTHRESF DLDKGKWIKH DENSNQDHQG FNHQHFPLTN PYNNTSSYYN LGHLQQSLEQ  240
SGNNVTVAIS NVAANNNNNL NLPPPSSSAP RDGSQLFFGP TPPAMSSLFP TYPSFLGASH  300
HHNHHHHQVV DGAGHLQLFS SNSNTATQQQ MMTGNTSLIR PFHHLMSSNH DTDRHSSDND  360
SDS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	4e-19	68	122	1	55	Putative transcription factor PCF6
5zkt_B	4e-19	68	122	1	55	Putative transcription factor PCF6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g034350.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB008269	0.0	AB008269.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSL3.
GenBank	BT029489	0.0	BT029489.1 Arabidopsis thaliana At5g60970 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010483755.1	0.0	PREDICTED: transcription factor TCP5-like
Refseq	XP_010483756.1	0.0	PREDICTED: transcription factor TCP5-like
Swissprot	Q9FME3	0.0	TCP5_ARATH; Transcription factor TCP5
TrEMBL	R0EXI8	0.0	R0EXI8_9BRAS; Uncharacterized protein
STRING	XP_010483755.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	1e-168	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]