PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g033760.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 276aa    MW: 31494.3 Da    PI: 8.928
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g033760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF702.1e-221662349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +n+sn qvtfskRr g++KKA+EL++LC+ae+a+i+fs+  k++ +
  Csa18g033760.1 16 MKNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGRKVFSF 62
                    589*************************************9999877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.235666IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-31665IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-28793IPR002100Transcription factor, MADS-box
CDDcd002658.66E-36778No hitNo description
PRINTSPR004041.4E-18828IPR002100Transcription factor, MADS-box
PfamPF003193.1E-241662IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-182843IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-184364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MVKKSKGRQK IEMIKMKNES NLQVTFSKRR SGLFKKASEL CTLCGAEIAI IVFSPGRKVF  60
SFGHPSVETV IDRFLNNNPP PPHQHNNMQL SELLSQLEAE KKKTEELRKM REKTKALGDW  120
WEDPVEGLAL NQLSGFKGNL ENLKKIVTQE ASKFFQATVP NFYVGSSSNA AFGLDDGSHI  180
HHDMDMFSQR RMMDINAFNY NQNPIHPNPA LQYGYSNHGN INEGFVQEYN MNYGQEYNPN  240
HNQNLNQSFK RESISEYEYH HGQGQGHPPH SRSGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-15787282MEF2C
5f28_B3e-15787282MEF2C
5f28_C3e-15787282MEF2C
5f28_D3e-15787282MEF2C
6bz1_A2e-15793288MEF2 CHIMERA
6bz1_B2e-15793288MEF2 CHIMERA
6bz1_C2e-15793288MEF2 CHIMERA
6bz1_D2e-15793288MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g033760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483690.10.0PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK21e-148AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLD7MTU51e-154D7MTU5_ARALL; MADS-box protein
STRINGXP_010483690.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-126AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]