PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g033540.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 245aa MW: 26760.7 Da PI: 9.4956

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g033540.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.6e-40	52	110	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 al+cprCdstntkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rknk+s+ Csa18g033540.1 52 LALRCPRCDSTNTKFCYYNNYSLTQPRYFCKSCRRYWTKGGTLRNIPVGGGCRKNKRST 110 5789****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-31	47	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.45	54	108	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-33	54	108	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	56	92	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDHLLQNQDV FGNYNKAREA MGVSYSSNPT QSDDQDQKKR SAAATRPQPP ELALRCPRCD 60 STNTKFCYYN NYSLTQPRYF CKSCRRYWTK GGTLRNIPVG GGCRKNKRST SSATRSLRTT 120 PEPASHDGKA FSAASFGGYS NNEQIDLSLA FALLNKQPPG SSAHLGFPSE FSSSHQSDME 180 SVFGTSQQKG NTGYAFGNGS SGLDIGMGDS SRVLWGFPWQ MNGESFGMMN IGIVKKYTTN 240 KDLG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:30626969}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g033540.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium (PubMed:30626969). Induced by the transcription factor MONOPTEROS (MP) in cells relevant for root initiation, and later in vascular tissues and hypophysis (PubMed:20220754). {ECO:0000269\|PubMed:20220754, ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493803	0.0	AB493803.1 Arabidopsis thaliana At5g60200 mRNA for hypothetical protein, partial cds, clone: RAAt5g60200.
GenBank	AK228185	0.0	AK228185.1 Arabidopsis thaliana mRNA for zinc finger protein - like, complete cds, clone: RAFL14-63-H23.
GenBank	BT005866	0.0	BT005866.1 Arabidopsis thaliana At5g60200 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010485257.1	0.0	PREDICTED: dof zinc finger protein DOF5.3-like
Swissprot	Q84TE9	1e-144	DOF53_ARATH; Dof zinc finger protein DOF5.3
TrEMBL	R0EWQ2	1e-150	R0EWQ2_9BRAS; Uncharacterized protein
STRING	XP_010485257.1	1e-180	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6132	18	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	1e-136	TARGET OF MONOPTEROS 6

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]