PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g032880.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 295aa    MW: 31844.4 Da    PI: 5.5814
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g032880.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like925.1e-29136189155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     +prl+Wtp+LH+rFv++v++L G++ A+Pkti++lm+v+gL++e+v+SHLQkYRl
  Csa18g032880.1 136 RPRLVWTPQLHKRFVDVVDHL-GIKSAVPKTIMQLMNVEGLSRENVASHLQKYRL 189
                     59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.449131192IPR017930Myb domain
SuperFamilySSF466895.73E-19133193IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-29135194IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-23137189IPR006447Myb domain, plants
PfamPF002492.5E-7139188IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGKEVIRMSG DDDDEHVPEW ETGLPEGDDL TPLSQSLVPS ILALAFSIIP ERSRTIHDVD  60
RASRVTISSL RSSSNGNGYS AATEDVVVVV DRVGSSSHGS DPKKQRRSDG GGGEAAAVDS  120
MAEEEGDSGT EKTLKRPRLV WTPQLHKRFV DVVDHLGIKS AVPKTIMQLM NVEGLSRENV  180
ASHLQKYRLY LKRVQGLTTE DGPYSSDQLF SSTPVPPQSF QDGGGSNGAT GKLGVPSMIP  240
MPVYGNHVGM MQGQYHQYRD HGNESNQYMM QQQNRFGTMV TSPSVGGGGD VNDK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A8e-34136192157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is a critical component of the regulatory circuit of the circadian clock. Binds to specific sites on CCA1 promoter leading to CCA1 activation. Is required for the rhythmic expression of other clock genes such as LHY, GI and APRR1/TOC1. {ECO:0000269|PubMed:21447790}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g032880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019095518.10.0PREDICTED: transcription factor BOA-like
SwissprotQ9LTH41e-137PCLL_ARATH; Transcription factor BOA
TrEMBLR0GN751e-164R0GN75_9BRAS; Uncharacterized protein
STRINGXP_010483598.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40552758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.11e-123G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]