PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g031170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 232aa MW: 24058.1 Da PI: 9.2571 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.4e-12 | 44 | 89 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ K +Ka++L + +eY++ Lq Csa18g031170.1 44 HSIAERLRRERIAERMKSLQELVPNT-----NKTDKASMLDEIIEYVRFLQ 89 99***********************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.71E-17 | 37 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.48E-12 | 37 | 93 | No hit | No description |
PROSITE profile | PS50888 | 17.028 | 39 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-16 | 41 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-9 | 44 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-13 | 45 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
ESGGPTIGSQ DGLQAQGTVS TTSAPVARQK PRVRARRGQA TDPHSIAERL RRERIAERMK 60 SLQELVPNTN KTDKASMLDE IIEYVRFLQL QVKVLSMSRL GGAGAVGPRL NGLSAEAGGR 120 LNALTAPCNG VNGNGNATGS SNESLRSTEQ RVAKLMEEDM GSAMQYLQGK GLCLMPISLA 180 TAISSSSTHS RGSLFHPIST PVAAEDANVA AAVAAPEASS TMDDVSAASK A* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 53 | RLRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g031170.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488614 | 0.0 | AF488614.1 Arabidopsis thaliana clone bHLH082 putative bHLH transcription factor mRNA, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010483364.1 | 1e-165 | PREDICTED: transcription factor bHLH82 | ||||
Swissprot | Q9LSQ3 | 1e-154 | BH082_ARATH; Transcription factor bHLH82 | ||||
TrEMBL | D7MNY8 | 1e-152 | D7MNY8_ARALL; Basic helix-loop-helix family protein | ||||
STRING | XP_010483364.1 | 1e-164 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11585 | 17 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58010.1 | 1e-116 | LJRHL1-like 3 |
Publications ? help Back to Top | |||
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