PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g030740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 376aa    MW: 41084.9 Da    PI: 6.2814
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g030740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.51.1e-071957339
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
                    +r C+ +++  +  fC+ +  +lC +C + +H+   H++
  Csa18g030740.1 19 ARSCDACKSVTAAVFCRVDTAFLCITCDTRIHSFtrHER 57
                    578******99*********************6577876 PP
2zf-B_box284.5e-0958103342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      ++C+ +e+ ++   C+ +   lC +C + +H+       H++vp+
  Csa18g030740.1  58 VWVCEVCEQAPAAVTCKADAAALCVTCDSDIHSAnplasrHERVPV 103
                     689*****************************66999999999986 PP
3CCT69.96.6e-24306349144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++
  Csa18g030740.1 306 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 349
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.6E-61760IPR000315B-box-type zinc finger
PROSITE profilePS501199.941760IPR000315B-box-type zinc finger
PfamPF006434.2E-62058IPR000315B-box-type zinc finger
CDDcd000212.14E-82060No hitNo description
PROSITE profilePS5011910.72256103IPR000315B-box-type zinc finger
PfamPF006434.7E-757103IPR000315B-box-type zinc finger
CDDcd000215.14E-959103No hitNo description
SMARTSM003364.6E-1061103IPR000315B-box-type zinc finger
PROSITE profilePS5101716.817306348IPR010402CCT domain
PfamPF062035.9E-18306348IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGFGLESIKS ISGGWGAAAR SCDACKSVTA AVFCRVDTAF LCITCDTRIH SFTRHERVWV  60
CEVCEQAPAA VTCKADAAAL CVTCDSDIHS ANPLASRHER VPVESFFDSA VTKISATSTF  120
GILGSSTTVD LTGSVPVMND DLGLCPWLLP NDFNEPAKIE IGTENMKGSD FMFSDFDRLI  180
DFEFPNSLSH HHHQHQPSGG DSIVPVQTKT EPLLLTNNND HCFDIDFCRS KLSSFTYPTQ  240
SLSYGVVPAD QSSLLSTSSL EYGVVPDGNT NNNSVSEISI PFNRSTITTS TAATTTGGDQ  300
TSSMDREARV LRYREKRKNR KFEKTIRYAS RKAYAESRPR IKGRFAKRTE TENDDVFLSH  360
VYASAAAQYG VVPTF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g030740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0884320.0AY088432.1 Arabidopsis thaliana clone 6639 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483296.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
SwissprotQ9FHH80.0COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLR0EWL40.0R0EWL4_9BRAS; Uncharacterized protein
STRINGXP_010483296.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78992435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.10.0CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]