PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g030120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 190aa    MW: 21422.9 Da    PI: 4.9798
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g030120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-1480123755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       Er+RR+++N++++ Lr+++P+      +K++Ka+i + A+ YI+ Lq
  Csa18g030120.1  80 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIQGLQ 123
                     57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.17773122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1776139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.98E-1276123No hitNo description
SMARTSM003532.4E-1479128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-1779138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-1180123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
SHNSRERRPT KLTRLLDSKI CREMENTIDQ EFSNYWEPSS FLQNEEFEYD SWPLEEAISG  60
SYDSSSPDGA ASSPASKNIV SERNRRQKLN QRLFALRSVV PNITKMDKAS IIKDAISYIQ  120
GLQYEEGKLE AEIRELESTP KSSLSFSKDF DRDLLVPVTS KKLKQLDSSS STSLIEVLDV  180
SHASLILSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1478132963Transcription factor MYC2
5gnj_B3e-1478132963Transcription factor MYC2
5gnj_E3e-1478132963Transcription factor MYC2
5gnj_F3e-1478132963Transcription factor MYC2
5gnj_G3e-1478132963Transcription factor MYC2
5gnj_I3e-1478132963Transcription factor MYC2
5gnj_M3e-1478132963Transcription factor MYC2
5gnj_N3e-1478132963Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g030120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1363800.0AY136380.1 Arabidopsis thaliana putative protein (At5g57140) mRNA, complete cds.
GenBankBT0021100.0BT002110.1 Arabidopsis thaliana putative protein (At5g57140) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019096011.11e-109PREDICTED: transcription factor bHLH35 isoform X2
SwissprotQ2HIV91e-101BH035_ARATH; Transcription factor bHLH35
TrEMBLD7MMS11e-103D7MMS1_ARALL; Basic helix-loop-helix family protein
STRINGXP_010483213.11e-108(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.17e-77bHLH family protein