PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g029850.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 718aa MW: 81757.3 Da PI: 9.595

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g029850.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.2	2.3e-11	309	354	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f+ Lr+llP+ +K +Ka++L A e ++sLq Csa18g029850.1 309 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLAIAREQLSSLQ 354 8889******************97.....8***********999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.564	304	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-14	306	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.81E-9	306	358	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.6E-13	308	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.0E-9	309	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-12	310	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence Send to blast
MDAYYNEASQ EPPSSSSSSS SSSSSRCLAR SLLLEYRQSL IPLHNGHVPS MAFMNNLPYV 60 EIRQQEIQRL AYNDAQRLFY QEAKIQTVIF MGCRSGEIEL GMTYDAANMK IEESLREWFP 120 EDFSRNSSPV NSDYLRPPRH PSTSSSSLSP NQVSEYSSLL FPLIPKPSTT TDAVNAPAHP 180 LLAPINMIHQ QQQEPLFRNR EREEEAMTQA ILAVLRGSSS PPSPSSSPLR KGRATAFKRY 240 YCMISGGGRA RPQPSVRKQS MMKRAITFYN RLNIQRRERF VRENATMAAD GSGGSGGGGR 300 SLSTTQLHHM ISERKRREKL NESFQALRSL LPPGTKKDKA SVLAIAREQL SSLQGEISKL 360 LKRNRELEAK LAGEREIGND LQPDERFNVC IRHIPESTSR ERMLDLRVVL REDIIRVDDL 420 MLRLLEFLKQ INNVSLVSIE ARSRARDSSV VLVSLRLKIE KDKASVLAIA REQLSSLQGE 480 ISKLLKRNRE LEAKLAGERE IGNDLQPDER FNVCIRHIPE STSRERMLDL RVVLREDIIR 540 VDDLMLRLLE FLKQINNVSL VSIEARSRAR DSSVVLVSLR LKIEGEWDES AFQEAVRRRN 600 RELEAKLAGE REIGNDLQPD ERFNVCIRHI PESTSRERML DLRVVLREDI IRVDDLMLRL 660 LEFLKQINNV SLVSIEARSR ARDSSVVLVS LRLKIEGEWD ESAFQEAVRR VVADLAH*

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence Send to blast

MDAYYNEASQ EPPSSSSSSS SSSSSRCLAR SLLLEYRQSL IPLHNGHVPS MAFMNNLPYV  60
EIRQQEIQRL AYNDAQRLFY QEAKIQTVIF MGCRSGEIEL GMTYDAANMK IEESLREWFP  120
EDFSRNSSPV NSDYLRPPRH PSTSSSSLSP NQVSEYSSLL FPLIPKPSTT TDAVNAPAHP  180
LLAPINMIHQ QQQEPLFRNR EREEEAMTQA ILAVLRGSSS PPSPSSSPLR KGRATAFKRY  240
YCMISGGGRA RPQPSVRKQS MMKRAITFYN RLNIQRRERF VRENATMAAD GSGGSGGGGR  300
SLSTTQLHHM ISERKRREKL NESFQALRSL LPPGTKKDKA SVLAIAREQL SSLQGEISKL  360
LKRNRELEAK LAGEREIGND LQPDERFNVC IRHIPESTSR ERMLDLRVVL REDIIRVDDL  420
MLRLLEFLKQ INNVSLVSIE ARSRARDSSV VLVSLRLKIE KDKASVLAIA REQLSSLQGE  480
ISKLLKRNRE LEAKLAGERE IGNDLQPDER FNVCIRHIPE STSRERMLDL RVVLREDIIR  540
VDDLMLRLLE FLKQINNVSL VSIEARSRAR DSSVVLVSLR LKIEGEWDES AFQEAVRRRN  600
RELEAKLAGE REIGNDLQPD ERFNVCIRHI PESTSRERML DLRVVLREDI IRVDDLMLRL  660
LEFLKQINNV SLVSIEARSR ARDSSVVLVS LRLKIEGEWD ESAFQEAVRR VVADLAH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	312	317	ERKRRE
2	313	318	RKRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g029850.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB024035	0.0	AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010483181.1	0.0	PREDICTED: putative transcription factor bHLH041
Swissprot	Q9LTS4	0.0	BH041_ARATH; Putative transcription factor bHLH041
TrEMBL	A0A1P8BAL1	0.0	A0A1P8BAL1_ARATH; Basic helix-loop-helix (BHLH) DNA-binding family protein
STRING	XP_010483181.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7060	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]