PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g029530.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 405aa MW: 45472.7 Da PI: 7.706

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g029530.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.2	1.4e-35	43	194	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........lelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 lp+G++F+Ptd+el+ e+L++kv+gk + +i+ +i++++P++Lp v+ + + +fF+k +++y+tg+rk+r+ Csa18g029530.1 43 LPAGVKFDPTDQELI-EHLEAKVKGKGknekwsssH---PlidefipTIDGEdGICYTHPQKLP-GVTRDGLSKHFFHKPSRAYTTGTRKRRKii 132 799**********.99***99655555541...055554433655545******.555666799**************889 PP NAM 78 ..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ +W++tgk+++v++ +g++ g+kk+Lv+y g+++++ekt+Wvmh+y+l Csa18g029530.1 133 qtdhdseltgSSETRWHKTGKTRPVMT-NGQQRGCKKILVLYtnFGKNRRPEKTNWVMHQYHL 194 999999997766889********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-38	35	213	IPR003441	NAC domain
PROSITE profile	PS51005	31.768	43	213	IPR003441	NAC domain
Pfam	PF02365	9.0E-16	44	194	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MKNSKFNLID SKLEEHHHLC GSKHCPGCGR MIQAATKPNW VGLPAGVKFD PTDQELIEHL 60 EAKVKGKGKN EKWSSSHPLI DEFIPTIDGE DGICYTHPQK LPGVTRDGLS KHFFHKPSRA 120 YTTGTRKRRK IIQTDHDSEL TGSSETRWHK TGKTRPVMTN GQQRGCKKIL VLYTNFGKNR 180 RPEKTNWVMH QYHLGINEEE REGELVVSKI FYQTQPRQCV SNIHWSDHHG SKEVTGIGVG 240 DEISGVAAAL QSLGSGDVVS RVRTNPYTRG FDEGTAEASK GRENQRMSGT CEEVHDGIIR 300 PSTTSSMSSH HMIHDHNQYH QIGDRRGFNI SSYPMTPTIT SQHESTFNVT STMPFQQQQL 360 RGRSSGSELE DLIMGCTTAT CTEDEHSEAN PPQNAEWLTF PPYW*

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MKNSKFNLID SKLEEHHHLC GSKHCPGCGR MIQAATKPNW VGLPAGVKFD PTDQELIEHL  60
EAKVKGKGKN EKWSSSHPLI DEFIPTIDGE DGICYTHPQK LPGVTRDGLS KHFFHKPSRA  120
YTTGTRKRRK IIQTDHDSEL TGSSETRWHK TGKTRPVMTN GQQRGCKKIL VLYTNFGKNR  180
RPEKTNWVMH QYHLGINEEE REGELVVSKI FYQTQPRQCV SNIHWSDHHG SKEVTGIGVG  240
DEISGVAAAL QSLGSGDVVS RVRTNPYTRG FDEGTAEASK GRENQRMSGT CEEVHDGIIR  300
PSTTSSMSSH HMIHDHNQYH QIGDRRGFNI SSYPMTPTIT SQHESTFNVT STMPFQQQQL  360
RGRSSGSELE DLIMGCTTAT CTEDEHSEAN PPQNAEWLTF PPYW*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g029530.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB013392	1e-180	AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBank	CP002688	1e-180	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010483136.1	0.0	PREDICTED: NAC domain-containing protein 10-like isoform X1
Swissprot	Q9M0F8	1e-113	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A1P8B9R1	0.0	A0A1P8B9R1_ARATH; NAC domain containing protein 99
STRING	XP_010483136.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14928	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56620.1	0.0	NAC domain containing protein 99

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]