PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g027230.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 281aa MW: 32106.5 Da PI: 6.8748

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g027230.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	49	7.7e-16	13	54	2	43
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i n+ r +t+ kR++ + KKA+E S+LC+++ ++i+++++ Csa18g027230.1 13 KIPNEKTRITTYKKRKACLYKKASEFSTLCGVDTCLIVYGPS 54 7899************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.5E-11	1	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-5	6	26	IPR002100	Transcription factor, MADS-box
CDD	cd00266	9.42E-26	7	83	No hit	No description
SuperFamily	SSF55455	4.58E-18	9	100	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.4	9	64	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.1E-16	13	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-5	26	41	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-5	41	62	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MGRKMVKMVK MEKIPNEKTR ITTYKKRKAC LYKKASEFST LCGVDTCLIV YGPSRAGDEM 60 VAEPELWPKD ESKVREIITK YRDIASSSCT KIYTVQECLE KNNTKVENSK TATKYQPWDK 120 QLDKCSLNEL YAVFMAVENK IQEATNKNQP FPDCASWSHE QLGLSGYNQQ CLEQIQLFLM 180 PTMEHNEFSF FPFINQVTST KTEVPSFSHG AEPMIANGQT FFYGSCSDGP YGPLMQRTAY 240 MEPIQWGLGS SMFNDAKQFS DYPFRFSQNN DLEDSSKHPM *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g027230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010485144.1	0.0	PREDICTED: agamous-like MADS-box protein AGL82
Swissprot	Q9FIM0	1e-47	AGL82_ARATH; Agamous-like MADS-box protein AGL82
TrEMBL	R0GT53	1e-172	R0GT53_9BRAS; Uncharacterized protein
STRING	XP_010485144.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5948	19	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	1e-168	M-type_MADS family protein

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]