PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g027230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 281aa MW: 32106.5 Da PI: 6.8748 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49 | 7.7e-16 | 13 | 54 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i n+ r +t+ kR++ + KKA+E S+LC+++ ++i+++++ Csa18g027230.1 13 KIPNEKTRITTYKKRKACLYKKASEFSTLCGVDTCLIVYGPS 54 7899************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.5E-11 | 1 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-5 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.42E-26 | 7 | 83 | No hit | No description |
SuperFamily | SSF55455 | 4.58E-18 | 9 | 100 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.4 | 9 | 64 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-16 | 13 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-5 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-5 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MGRKMVKMVK MEKIPNEKTR ITTYKKRKAC LYKKASEFST LCGVDTCLIV YGPSRAGDEM 60 VAEPELWPKD ESKVREIITK YRDIASSSCT KIYTVQECLE KNNTKVENSK TATKYQPWDK 120 QLDKCSLNEL YAVFMAVENK IQEATNKNQP FPDCASWSHE QLGLSGYNQQ CLEQIQLFLM 180 PTMEHNEFSF FPFINQVTST KTEVPSFSHG AEPMIANGQT FFYGSCSDGP YGPLMQRTAY 240 MEPIQWGLGS SMFNDAKQFS DYPFRFSQNN DLEDSSKHPM * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g027230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010485144.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL82 | ||||
Swissprot | Q9FIM0 | 1e-47 | AGL82_ARATH; Agamous-like MADS-box protein AGL82 | ||||
TrEMBL | R0GT53 | 1e-172 | R0GT53_9BRAS; Uncharacterized protein | ||||
STRING | XP_010485144.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5948 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 1e-168 | M-type_MADS family protein |
Publications ? help Back to Top | |||
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