PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g024300.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 349aa    MW: 39200.3 Da    PI: 4.5995
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g024300.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-20131181155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr+++ +g+W+AeIrdp +   r+r++lg+f taeeAa  +++a+ +l+g
  Csa18g024300.1 131 KKYRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFETAEEAAVVYDNAAIRLRG 181
                     59********.**********743...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.25E-34131188No hitNo description
Gene3DG3DSA:3.30.730.108.3E-31132189IPR001471AP2/ERF domain
SMARTSM003809.6E-40132195IPR001471AP2/ERF domain
PROSITE profilePS5103224.197132189IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-22132190IPR016177DNA-binding domain
PfamPF008471.5E-12132181IPR001471AP2/ERF domain
PRINTSPR003677.8E-11133144IPR001471AP2/ERF domain
PRINTSPR003677.8E-11155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEEFIDFRPL KYTEHKTSVT KYTKKSPAKL SSSASSSSSA VDHHHHHQSL RKVSICFTDP  60
DATDSSSDED EQDFLFPRRR VKRFVNEITV EPACNNTTTG GVSLKDKKRL SSSADESQSP  120
AKRHLVAGQT KKYRGVRQRP WGKWAAEIRD PEQRRRIWLG TFETAEEAAV VYDNAAIRLR  180
GPDALTNFSI PPQEKEEEEE EPEPVIDTKP EINITTTTTT TTSCSESTED FQHLSSPTSV  240
LNLQSEEIQQ IQQPFKSAKP EPGISDAPWW HTGFGTCSGE TDDSFPLDTP FLDNYFNESP  300
PEMSIFDQTM GGMGQVFSEN DDIFGDMFLD GQSINIGDEL MTMILMIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-23131190161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g024300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482718.10.0PREDICTED: ethylene-responsive transcription factor CRF3-like
SwissprotQ9FK121e-156CRF3_ARATH; Ethylene-responsive transcription factor CRF3
TrEMBLD7MSX01e-156D7MSX0_ARALL; Uncharacterized protein
STRINGXP_010482718.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22292576
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.11e-152cytokinin response factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]
  3. Jeon J,Cho C,Lee MR,Van Binh N,Kim J
    CYTOKININ RESPONSE FACTOR2 (CRF2) and CRF3 Regulate Lateral Root Development in Response to Cold Stress in Arabidopsis.
    Plant Cell, 2016. 28(8): p. 1828-43
    [PMID:27432872]