PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g024010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | Nin-like | ||||||||
Protein Properties | Length: 231aa MW: 26621.4 Da PI: 7.93 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.3 | 2.3e-26 | 119 | 169 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++++++++++F+ pi +AAkeL+v+lTvLK++CR++GI RWPhRk+ksl Csa18g024010.1 119 QDKLEMSEIKQFFDRPIMKAAKELNVGLTVLKKRCRELGIYRWPHRKLKSL 169 6799*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.962 | 105 | 190 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.0E-21 | 122 | 169 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MDPNSLSLLN SPKIENDYDP DSLYDMLPPL ESLLDIEDLK PTRGLHFQFQ YESFEDLFES 60 IDVTNIIPSD DIDMPAQEPY ISSGSSSSSP LAVQKYCPSS NVRSEKRTVK KRNSKKKRQD 120 KLEMSEIKQF FDRPIMKAAK ELNVGLTVLK KRCRELGIYR WPHRKLKSLN SLIKNLKSVG 180 MEEEVKNLEE HRVLIEQEPD AELSDGTKKL RQACFKANYK RRKSLADDYC * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g024010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010485094.1 | 1e-160 | PREDICTED: protein RKD4-like | ||||
Swissprot | Q9LVU8 | 1e-115 | RKD4_ARATH; Protein RKD4 | ||||
TrEMBL | R0GE40 | 1e-126 | R0GE40_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010485094.1 | 1e-159 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12585 | 22 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 1e-101 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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