PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g023450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 592aa    MW: 63628.1 Da    PI: 4.8653
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g023450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.81.8e-1062035912374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +++++e+A+++++g++e a++lLar+se+ s ++++ ++l+ ++++AL++r+++   + +k l+ s+++e   +e+l +++l++e+sP++k++++
  Csa18g023450.1 203 RQTVMEIATVIAEGKTEIASELLARVSETPSLRRNSEEKLVDFMVKALRHRINN---NPAKGLA-SPATELYGKEHLLSTQLLYELSPCFKLGFM 293
                     6889*************************************************9...3333333.333334599********************* PP

            GRAS  97 taNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpeg..........ppslRiTgvgspesg.....skeeleetgerLakfAeel 172
                     +aN aIl+++ ++      +H+iDfdi++G+Q+++Ll+aL++R++g          +p ++iT+v ++e +      +e+l+++g+ L+++ ++l
  Csa18g023450.1 294 AANLAILDSAGNNdegiMNLHVIDFDIGEGGQYVNLLHALSTRRNGinqgqrqstkTPVVKITVVTNSEGFvvgdgGEEKLKAVGDLLSQLGDRL 388
                     **********9997766778***********************9777777888888***********8777999999****************** PP

            GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                     g++++fnv+++ rl dl+ e+L ++p+E laVn++++l+r++desv++e++rde+L+ vk+l+P+vv++veqe++ n++sFl r++e++ +y al
  Csa18g023450.1 389 GISVSFNVVASLRLGDLSRESLGCEPEEPLAVNFAFKLYRVPDESVCTENPRDELLRRVKGLNPRVVTIVEQEMNSNTASFLGRVSESCACYGAL 483
                     ********8888*********************************************************************************** PP

            GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvl 360
                     ++s+e+++p+ + +r kvE+  + r++ n+v+ceg +r+er+e ++kWr+r+++aGF+ ++ sek+a+++k+ l++ k    g++v+e++g +++
  Csa18g023450.1 484 LESVESTVPSSNLDRGKVEEG-IDRKLINAVTCEGIDRIERCEVFGKWRMRMSMAGFELMQSSEKIAESMKSRLSNGKrvHSGFTVKEDNGGVCF 577
                     *********************.***************************************************9988777899************ PP

            GRAS 361 gWkdrpLvsvSaWr 374
                     gW++r++ ++SaWr
  Csa18g023450.1 578 GWMGRTIAVASAWR 591
                     *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.902176569IPR005202Transcription factor GRAS
PfamPF035146.1E-104203591IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MSSGFPGGGG GPEFYGGGGG GRSIIHGGPG TNHLQSPSPV IDLTSLNDMS FSQRYGLPVL  60
RSQTTQQQSD LGLFGGIRMG FGSGNDNNNN MTLTGVPCIE PVQRNRVHES ENNNNNMLNS  120
LRELEKQLLD DDDDESDAQG GGGGDDDVSV ITNSNSDWIQ NLVTPNPNPN PYPVTSSSPS  180
SSSSSSSPST VSTTTTTASV CSRQTVMEIA TVIAEGKTEI ASELLARVSE TPSLRRNSEE  240
KLVDFMVKAL RHRINNNPAK GLASPATELY GKEHLLSTQL LYELSPCFKL GFMAANLAIL  300
DSAGNNDEGI MNLHVIDFDI GEGGQYVNLL HALSTRRNGI NQGQRQSTKT PVVKITVVTN  360
SEGFVVGDGG EEKLKAVGDL LSQLGDRLGI SVSFNVVASL RLGDLSRESL GCEPEEPLAV  420
NFAFKLYRVP DESVCTENPR DELLRRVKGL NPRVVTIVEQ EMNSNTASFL GRVSESCACY  480
GALLESVEST VPSSNLDRGK VEEGIDRKLI NAVTCEGIDR IERCEVFGKW RMRMSMAGFE  540
LMQSSEKIAE SMKSRLSNGK RVHSGFTVKE DNGGVCFGWM GRTIAVASAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-321805914419Protein SHORT-ROOT
5b3h_E3e-321805914419Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g023450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482614.10.0PREDICTED: scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLR0EW310.0R0EW31_9BRAS; Uncharacterized protein
STRINGXP_010482614.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8