PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g023060.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 609aa    MW: 67108.8 Da    PI: 6.7726
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g023060.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.31.3e-132391956
                    HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    F+ +++p++++r eL kkl L+ +q+k+WFqNrR+++k
  Csa18g023060.1  2 FKVCPHPNEKQRLELGKKLTLEGKQIKFWFQNRRTQMK 39
                    999********************************999 PP
2START159.92e-501503522206
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT.... CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg.... 88 
                     la ea++el+k+a++e p+W + s  e++ +v+              r++g+v  +++ lv  l+d++ +W e+++     a+t+evis+g    
  Csa18g023060.1 150 LAMEAMNELLKLAELENPLWRSKS--EKESIVRPAC----------TRETGLVLINSVALVDALMDTN-KWAEMFEcfvaVASTVEVISNGsdgs 231
                     5789******************99..6666666666..........799*******************.************************** PP

                     ..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS
           START  89 ..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180
                       g lqlm+ae+q++splvp R   f+Ry++q+g+g w++vdvS d ++++++ +s+  ++++pSg++i+  +ng skvtw+eh +++++++h+l
  Csa18g023060.1 232 rnGSLQLMQAEFQVMSPLVPiRQKKFLRYCKQHGDGLWAVVDVSYDINRENENLKSYGGSKRFPSGCIIQNIDNGCSKVTWIEHSEYGESHIHSL 326
                     *********************************************************************************************** PP

                     HHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 181 lrslvksglaegaktwvatlqrqcek 206
                     +++l++s++  ga +w+atlqrqce+
  Csa18g023060.1 327 YQPLLGSSVGLGATKWLATLQRQCES 352
                     ************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000866.98E-10141No hitNo description
SuperFamilySSF466891.0E-10144IPR009057Homeodomain-like
PROSITE profilePS5007113.831141IPR001356Homeobox domain
PfamPF000463.1E-11239IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-11247IPR009057Homeodomain-like
PROSITE profilePS5084840.923140355IPR002913START domain
CDDcd088754.40E-98146351No hitNo description
SuperFamilySSF559612.33E-31146353No hitNo description
SMARTSM002345.3E-38149352IPR002913START domain
PfamPF018524.1E-44150352IPR002913START domain
Gene3DG3DSA:3.30.530.201.4E-4153329IPR023393START-like domain
SuperFamilySSF559614.26E-19377600No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 609 aa     Download sequence    Send to blast
FFKVCPHPNE KQRLELGKKL TLEGKQIKFW FQNRRTQMKT QLERHENVIL RQENEKLRLE  60
NSFLKESMRG SLCIDCGGAV IPGEVSFEQH QLRIENTKLK DELDRICALA NRFIGGSISL  120
EQPLNGGIGS EHLPIGNGFS GGTSLMFMDL AMEAMNELLK LAELENPLWR SKSEKESIVR  180
PACTRETGLV LINSVALVDA LMDTNKWAEM FECFVAVAST VEVISNGSDG SRNGSLQLMQ  240
AEFQVMSPLV PIRQKKFLRY CKQHGDGLWA VVDVSYDINR ENENLKSYGG SKRFPSGCII  300
QNIDNGCSKV TWIEHSEYGE SHIHSLYQPL LGSSVGLGAT KWLATLQRQC ESFTNLLSSQ  360
DHTGLSLTGT KSILKLAQRM KVNFYSGITA SSVHKWEKLN AENVGQDTRI LTRKSLEPSG  420
IVLSAATSLW LPVTQQRLFE FLCDGKCRNQ WDILSNGASM ETTLLVPKGQ HEGSCVSLLR  480
AAGKDQNESS MLILQETWND ASGAMVVYAP VDIPSMNVVM SGGDSVYVAL LPSGFSIFPD  540
GSSSLSDQID TNGGLVNQES KGCLLTVGFQ ILVNSLPTAK LNVESVETVN NLIACTIHKI  600
RAALRIPA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-GCATTAAATGC-3'. {ECO:0000269|PubMed:16778018}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g023060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256031e-174AB025603.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F17P19.
GenBankCP0026881e-174CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019095387.10.0PREDICTED: homeobox-leucine zipper protein HDG7 isoform X2
SwissprotQ9LTK30.0HDG7_ARATH; Homeobox-leucine zipper protein HDG7
TrEMBLR0F0C90.0R0F0C9_9BRAS; Uncharacterized protein
STRINGXP_010482564.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52170.10.0homeodomain GLABROUS 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]