PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g022640.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 198aa    MW: 22921.3 Da    PI: 8.9865
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g022640.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.91e-142778255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +++h e Er+RR+++ + ++ Lr+llP  +   ++K s ++ + +Av+YIk+Lq
  Csa18g022640.1 27 KMMHRETERQRRQEMATLYASLRSLLPLHF--IKGKRSTSDQVNEAVNYIKYLQ 78
                    789*************************65..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-142392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.2972577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-112791IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-112778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.72E-102782No hitNo description
SMARTSM003535.1E-73183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDDCRDKRRR RCTKLTCSKD NNNDMEKMMH RETERQRRQE MATLYASLRS LLPLHFIKGK  60
RSTSDQVNEA VNYIKYLQRK TEELSLRRDE LMLLSRGSFV GSSNDDSKEE MEMMSRKNHV  120
VVRQCLVGVE IVFSSGCRSG QPRFSNVLQV LSENGLYLLN SFSSIVDDRL IYTIQAEVND  180
ITLVDLAALE SRLIRMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g022640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0109521e-179BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482521.11e-142PREDICTED: transcription factor bHLH36-like
SwissprotQ9FLI11e-98BH036_ARATH; Transcription factor bHLH36
TrEMBLR0GSA51e-117R0GSA5_9BRAS; Uncharacterized protein
STRINGXP_010482521.11e-142(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.11e-101bHLH family protein