PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa18g021260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 174aa MW: 19467.6 Da PI: 4.3918 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 166.3 | 4e-52 | 23 | 120 | 2 | 99 |
NF-YC 2 lksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ++ +w++q+e++tdfkn++lPlarikki+kad+dv+m+sa+aPvl++kace+fi++lt rsw haeenk +tl+ksdi+aav++t ++dfl+d+v Csa18g021260.1 23 IRDYWIEQMENVTDFKNRQLPLARIKKIMKADPDVHMVSADAPVLFAKACEMFIMDLTSRSWRHAEENKHHTLQKSDISAAVASTYTYDFLLDVV 117 789******************************************************************************************** PP NF-YC 97 prd 99 p+d Csa18g021260.1 118 PKD 120 *98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.2E-30 | 27 | 131 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 8.4E-34 | 33 | 104 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.6E-21 | 41 | 104 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 174 aa Download sequence Send to blast |
MENNNQLPPS YSQPQPQTES SNIRDYWIEQ MENVTDFKNR QLPLARIKKI MKADPDVHMV 60 SADAPVLFAK ACEMFIMDLT SRSWRHAEEN KHHTLQKSDI SAAVASTYTY DFLLDVVPKD 120 VDPGFAPMPH PDGVPQYYYP PGIYPSPPTQ AWPEEAGEEE DEAEGSGRNG GGN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-41 | 29 | 119 | 5 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa18g021260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010482362.1 | 1e-128 | PREDICTED: nuclear transcription factor Y subunit C-6-like | ||||
Swissprot | Q9FGP7 | 2e-79 | NFYC6_ARATH; Nuclear transcription factor Y subunit C-6 | ||||
TrEMBL | A0A384KFQ7 | 5e-77 | A0A384KFQ7_ARATH; NF-YC6 | ||||
TrEMBL | C0SVT2 | 5e-77 | C0SVT2_ARATH; Uncharacterized protein At5g50480 (Fragment) | ||||
STRING | XP_010482362.1 | 1e-127 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50480.1 | 2e-65 | nuclear factor Y, subunit C6 |
Publications ? help Back to Top | |||
---|---|---|---|
|