PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa18g021250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 225aa MW: 24704.1 Da PI: 4.334 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 132.1 | 1.8e-41 | 36 | 135 | 1 | 100 |
NF-YC 1 qlksfwekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 q++ f ++qi++a++ +nhelP arikki+k+d++v+mi+ eaP+llskace++i++lt+rswl++ e ++ lk+sdi+ avtr f+flvdi Csa18g021250.1 36 QIRDFCIEQIGNASNTRNHELPPARIKKIMKSDPNVNMIAGEAPILLSKACEMLIVDLTMRSWLNTVERGQKKLKRSDISVAVTRGLSFTFLVDI 130 7899******************************************************************************************* PP NF-YC 96 vprde 100 vprde Csa18g021250.1 131 VPRDE 135 ***97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.39E-21 | 47 | 135 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.5E-26 | 48 | 118 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.2E-16 | 55 | 118 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
METNADHHQR PLLPRPSFSN LLLSSFYPRP LPYPLQIRDF CIEQIGNASN TRNHELPPAR 60 IKKIMKSDPN VNMIAGEAPI LLSKACEMLI VDLTMRSWLN TVERGQKKLK RSDISVAVTR 120 GLSFTFLVDI VPRDESVNVV DPRFVDMLIP RSEDLPPGMV LGHPVVGCNG MYFIPPQMQE 180 LPAAPCDGEE EEAVGDGEEA AGDLEEAAGD QEEAAGEIEE NSGN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-29 | 42 | 133 | 4 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa18g021250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010485030.1 | 1e-165 | PREDICTED: nuclear transcription factor Y subunit C-7-like | ||||
Swissprot | Q9FGP8 | 4e-66 | NFYC7_ARATH; Nuclear transcription factor Y subunit C-7 | ||||
TrEMBL | C0SVT1 | 1e-63 | C0SVT1_ARATH; Uncharacterized protein At5g50470 (Fragment) | ||||
STRING | XP_010485030.1 | 1e-164 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20210 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G50470.1 | 2e-63 | nuclear factor Y, subunit C7 |
Publications ? help Back to Top | |||
---|---|---|---|
|