PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g020950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 194aa    MW: 21730.3 Da    PI: 6.5013
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g020950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.25.7e-102766443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    e k +r v  skRr++++ KA  L+ L +a++av + s++
  Csa18g020950.1 27 ETKQQRAVACSKRRQTVFSKAADLCHLSGANIAVFVTSPS 66
                    77999********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.3E-161675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.321666IPR002100Transcription factor, MADS-box
CDDcd002667.44E-211796No hitNo description
SuperFamilySSF554553.66E-1618104IPR002100Transcription factor, MADS-box
PfamPF003194.9E-92766IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MPSSSTNASD FTMKKGTKRK IEIKKRETKQ QRAVACSKRR QTVFSKAADL CHLSGANIAV  60
FVTSPSEMSD VVYSFSGYSP AQEIADCYLN RKPPPKIDVK PQSKLGFWWE DPDLYHSCDD  120
LSELNILEDR IERVKKHMMA CLEKKEKSQS VSNSEQNPST CSLDEDCDRS TSYIASGFDL  180
NSSASHDFEF CSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g020950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019090030.11e-113PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLR0HBN42e-91R0HBN4_9BRAS; Uncharacterized protein
STRINGXP_010455155.11e-109(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.17e-82AGAMOUS-like 39