PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g020670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family AP2
Protein Properties Length: 377aa    MW: 41664.6 Da    PI: 9.6811
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g020670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-2075124255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Csa18g020670.1  75 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 124
                     7********.**********7.....337************************998 PP
2AP264.81.8e-20229278255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Csa18g020670.1 229 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 278
                     7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-1475124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-3375133IPR001471AP2/ERF domain
PROSITE profilePS5103225.73975132IPR001471AP2/ERF domain
SMARTSM003805.9E-3875138IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2275133IPR016177DNA-binding domain
PRINTSPR003679.5E-127687IPR001471AP2/ERF domain
CDDcd000183.52E-1583134No hitNo description
PRINTSPR003679.5E-1298114IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22229287IPR016177DNA-binding domain
PfamPF008473.2E-14229278IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-33229287IPR001471AP2/ERF domain
PROSITE profilePS5103225.739229286IPR001471AP2/ERF domain
SMARTSM003805.9E-38229292IPR001471AP2/ERF domain
CDDcd000183.52E-15237288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MSAMVSALTQ VVSGRSQTEA ERAQSSSSSA GDKRGWLRID SSLPSSFAPV DSSLGPIEEF  60
TSKALPDEIG GKRRRYRGVR QRPWGKWAAE IRDPHKAARV WLGTFDTAEA AARAYDEAAL  120
RFRGSKAKLN FPEDVRLLLP PPPPPPPPPL PLPADTVANK EEEDLMNYWS YSNLLQSSGQ  180
RSFYGHGQED SSNILEHSPM KQPLPPSSSR QKEFTSKALP DEIGGKRRRY RGVRQRPWGK  240
WAAEIRDPHK AARVWLGTFD TAEAAARAYD EAALRFRGSK AKLNFPEDVR LLLPPPPPPP  300
PPPLPLPADT VANKEEEDLM NYWSYSNLLQ SSGQRSFYGH GQEDSSNILE HSPMKQPLPP  360
SSSRQSSSDF SGPSST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2272289266ATERF1
3gcc_A2e-2272289266ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g020670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482311.11e-110PREDICTED: ethylene-responsive transcription factor ERF110-like isoform X1
SwissprotQ70II31e-84EF110_ARATH; Ethylene-responsive transcription factor ERF110
TrEMBLA0A178U7F58e-81A0A178U7F5_ARATH; Uncharacterized protein
TrEMBLG8IQH24e-81G8IQH2_ARATH; Ethylene response factor 110
STRINGXP_010482311.11e-109(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.14e-64ethylene response factor 110