PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g020080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 348aa    MW: 38489 Da    PI: 4.6562
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g020080.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.11.8e-16176212135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ +  Tp +Rrgp g++tLCnaCGl+++ kg+
  Csa18g020080.1 176 CEHCGVDEsnTPAMRRGPAGPRTLCNACGLMWANKGT 212
                     ******9999************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009795.2E-54075IPR010399Tify domain
PROSITE profilePS5132011.8514075IPR010399Tify domain
PfamPF062001.3E-84374IPR010399Tify domain
PROSITE profilePS5101712.759107149IPR010402CCT domain
PfamPF062031.4E-15107148IPR010402CCT domain
PROSITE profilePS501149.328170227IPR000679Zinc finger, GATA-type
SMARTSM004014.6E-12170228IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.52E-11172221No hitNo description
Gene3DG3DSA:3.30.50.102.2E-14174217IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.69E-16175219No hitNo description
PROSITE patternPS003440176203IPR000679Zinc finger, GATA-type
PfamPF003202.2E-14176212IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MKAATNPEIL EVDDEGCEND DLVDDVYAAE QIGSEGVSTK PSRTSELTLS FEGEVFVFPA  60
VTPDKVKTVL LLLGGRDIPT PVPTLKLPFE NSRGVGDNPR RSNLSRRLAS LVRFREKRKE  120
RCFDKKIRYT VRKEVAQRMH RNNGQFVSVR DGSNWEATQG GLQDGTLHSE TATRRCEHCG  180
VDESNTPAMR RGPAGPRTLC NACGLMWANK GTLRDLSKGA RNLSVSQIEP ETQIDIKPLY  240
TEDSSKQDKN GVSVDPTKAI QEFPLDTDGN PDVKVFIINC FPFQRHAHTF LLDIFFFGQG  300
LQEADEDMAS YLPVGMLSSS ADDDDQEPLV NLANPSDTDF DIPSSFD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g020080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482249.10.0PREDICTED: GATA transcription factor 24
SwissprotQ8GXL76e-64GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A067L2M71e-134A0A067L2M7_JATCU; Uncharacterized protein
STRINGXP_010482249.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-61ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]