PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa18g020080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 348aa MW: 38489 Da PI: 4.6562 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 51.1 | 1.8e-16 | 176 | 212 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+ + Tp +Rrgp g++tLCnaCGl+++ kg+ Csa18g020080.1 176 CEHCGVDEsnTPAMRRGPAGPRTLCNACGLMWANKGT 212 ******9999************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 5.2E-5 | 40 | 75 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 11.851 | 40 | 75 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.3E-8 | 43 | 74 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.759 | 107 | 149 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.4E-15 | 107 | 148 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 9.328 | 170 | 227 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.6E-12 | 170 | 228 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.52E-11 | 172 | 221 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.2E-14 | 174 | 217 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 8.69E-16 | 175 | 219 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 176 | 203 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.2E-14 | 176 | 212 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 348 aa Download sequence Send to blast |
MKAATNPEIL EVDDEGCEND DLVDDVYAAE QIGSEGVSTK PSRTSELTLS FEGEVFVFPA 60 VTPDKVKTVL LLLGGRDIPT PVPTLKLPFE NSRGVGDNPR RSNLSRRLAS LVRFREKRKE 120 RCFDKKIRYT VRKEVAQRMH RNNGQFVSVR DGSNWEATQG GLQDGTLHSE TATRRCEHCG 180 VDESNTPAMR RGPAGPRTLC NACGLMWANK GTLRDLSKGA RNLSVSQIEP ETQIDIKPLY 240 TEDSSKQDKN GVSVDPTKAI QEFPLDTDGN PDVKVFIINC FPFQRHAHTF LLDIFFFGQG 300 LQEADEDMAS YLPVGMLSSS ADDDDQEPLV NLANPSDTDF DIPSSFD* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa18g020080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010482249.1 | 0.0 | PREDICTED: GATA transcription factor 24 | ||||
Swissprot | Q8GXL7 | 6e-64 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A067L2M7 | 1e-134 | A0A067L2M7_JATCU; Uncharacterized protein | ||||
STRING | XP_010482249.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12294 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21175.2 | 3e-61 | ZIM-like 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|