PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g018750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB | ||||||||
Protein Properties | Length: 380aa MW: 42860 Da PI: 5.3992 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.8e-17 | 45 | 92 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l ++++ G g+W++ +++ g+ R++k+c++rw +yl Csa18g018750.1 45 RGRWTAEEDEILTNYIQTNGEGSWRSLPKKAGLLRCGKSCRLRWINYL 92 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.3 | 3.7e-18 | 98 | 143 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++E+e++v+++++lG++ W++Ia +++ gRt++++k++w+++l Csa18g018750.1 98 RGNITADEEEIIVKLHTLLGNR-WSLIATHLP-GRTDNEIKNYWNSHL 143 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.489 | 40 | 92 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-28 | 42 | 139 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-12 | 44 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-14 | 45 | 92 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-22 | 46 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.90E-8 | 47 | 92 | No hit | No description |
PROSITE profile | PS51294 | 27.028 | 93 | 147 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-16 | 97 | 145 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-15 | 98 | 143 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.4E-25 | 100 | 147 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.65E-10 | 102 | 143 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051555 | Biological Process | flavonol biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
LSHSLTQGTK KCFLFFEFLF LFFCQRRDRE AMGRAPCCEK IGLKRGRWTA EEDEILTNYI 60 QTNGEGSWRS LPKKAGLLRC GKSCRLRWIN YLRRDLKRGN ITADEEEIIV KLHTLLGNRW 120 SLIATHLPGR TDNEIKNYWN SHLRRKIYAF TAVSGDEHNL VINDLVLKKS SSSSPSGAKN 180 NKKTKKKKKG RTSRSSMKKH KQMVTASSKC VPQPKEPESE ISDGGQNGNF EGDQSLGPYE 240 WLDGELERLL SSCVWECTSE EAANGVNDEK MCESGDNSSC CVGLFEEEQG SEAKLGHVGI 300 TKVDGDRDME MEKEREGSVL SSNSNENDDK DWWLGLCNSS EFGFGIDDEL LDLEFQGNLT 360 CHQSEDLWDL SDIGEITLD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-23 | 43 | 147 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00598 | PBM | Transfer from AT5G49330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g018750.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF371977 | 0.0 | AF371977.1 Arabidopsis thaliana putative transcription factor (At5g49330) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010482211.1 | 0.0 | PREDICTED: myb-related protein 308 | ||||
Swissprot | Q9FJ07 | 0.0 | MY111_ARATH; Transcription factor MYB111 | ||||
TrEMBL | D7MNR3 | 0.0 | D7MNR3_ARALL; AtMYB111 | ||||
STRING | XP_010482211.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 0.0 | myb domain protein 111 |