PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g018650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GATA | ||||||||
Protein Properties | Length: 138aa MW: 15043 Da PI: 9.8654 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.5 | 7.6e-18 | 33 | 66 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ Cgt+kTplWR gp+g+ +LCnaCG+++ kk+ Csa18g018650.1 33 CADCGTSKTPLWRGGPSGPNSLCNACGIRNTKKR 66 ********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.24E-12 | 26 | 67 | No hit | No description |
SMART | SM00401 | 4.2E-12 | 27 | 78 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.822 | 27 | 60 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.0E-14 | 31 | 66 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.97E-12 | 32 | 77 | No hit | No description |
Pfam | PF00320 | 9.5E-16 | 33 | 67 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 33 | 58 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MLDHSEEVLV DSETMKGRVG DVMIEQSNNK KTCADCGTSK TPLWRGGPSG PNSLCNACGI 60 RNTKKRRGTE DDNNKKPKKS SPGGGNPRFS ESLKQRLIDL GMTKSHRSTV EKQRRKLGEE 120 EQAAVLLMAL SYGSVYT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g018650.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010482207.1 | 5e-98 | PREDICTED: GATA transcription factor 16-like | ||||
Swissprot | Q9FJ10 | 7e-66 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | V4MLN4 | 3e-67 | V4MLN4_EUTSA; Uncharacterized protein | ||||
STRING | XP_010482207.1 | 2e-97 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5050 | 26 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 3e-59 | GATA transcription factor 16 |
Publications ? help Back to Top | |||
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