PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g014330.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family CO-like
Protein Properties Length: 380aa    MW: 41780.3 Da    PI: 6.0532
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g014330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.32.3e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ ++e++   +C+++  +lC +C  + H+       H++
  Csa18g014330.1  4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                    6*****************************65677777776 PP
2zf-B_box231.7e-074691440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.........Htvv 40
                     +C++++ ++++  C d ++ lC++C   +H g         H+++
  Csa18g014330.1 46 LICERCNAQPASVRCSDERVSLCQNCDWVGHDGtssttttshHKRQ 91
                    68*****************************778888888877765 PP
3CCT59.51.2e-20322365144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R++a++RYkeK+k RkF+K++rY sRK++A+ R RvKGrFvk+ 
  Csa18g014330.1 322 RNNAVMRYKEKKKARKFDKRVRYVSRKERADVRRRVKGRFVKSG 365
                     99***************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.627147IPR000315B-box-type zinc finger
SMARTSM003368.2E-9447IPR000315B-box-type zinc finger
CDDcd000212.45E-7447No hitNo description
PROSITE profilePS501199.1864393IPR000315B-box-type zinc finger
CDDcd000212.76E-54776No hitNo description
PfamPF062032.5E-15322364IPR010402CCT domain
PROSITE profilePS5101715.1322364IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLICER CNAQPASVRC  60
SDERVSLCQN CDWVGHDGTS STTTTSHHKR QTINCYSGCP SSAELSSIWS FCLDLNMSST  120
GESACEQGMG LMTIDEGPGD KSRVQNVNVD QSGTSSAAQG MDRSCVPENT SLAKELGVCE  180
DDFNGNLIMD EVDMALENYE ELFGAAFNSS RYLFEHGGIG SLFDKDEAPE GSIEGNAMQQ  240
PAISNNASAD DSFMTCRTEP IICYSSKPAH SNISFSRVTG ESNAGDFQDC GASSMKQHSN  300
EPQPWCPPKS QDIIASSHAT TRNNAVMRYK EKKKARKFDK RVRYVSRKER ADVRRRVKGR  360
FVKSGEAYDY DPMSPARSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g014330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0399570.0AY039957.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds.
GenBankAY1426070.0AY142607.1 Arabidopsis thaliana unknown protein (At5g48250) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482071.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_010482072.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_019095535.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA90.0COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLR0GR910.0R0GR91_9BRAS; Uncharacterized protein
STRINGXP_010482073.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]