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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Csa18g012440.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 312aa MW: 34817.5 Da PI: 9.815 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa18g012440.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 332.5 | 1.1e-101 | 1 | 312 | 1 | 274 |
GAGA_bind 1 mdddgsre..rnkgyye....pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllve 88
mdd g+re r+k+ ++ +s+ +q+ms+iaerda+i+ernla+sekkaa+aerdmaflqrd+a+aern+a++erd++l+al+++e
Csa18g012440.1 1 MDDGGHREngRHKAAPGqwmmQHqPSM-----KQVMSIIAERDAAIQERNLAISEKKAAIAERDMAFLQRDTAIAERNNAIMERDSALTALQYRE 90
999999877777762221112222344.....5************************************************************** PP
GAGA_bind 89 nsla.....salpvgvqvlsgtksidslqqlse......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkkse 172
ns++ +++++g+q+++g+k++++ +++++ pql+++a+e+re+e ++ l+++ a +a e++k+k+++r k+pk++++++++k+++
Csa18g012440.1 91 NSMVtaaaaNMSAPGCQMSRGVKHMHHPHMHHHhqqhhiPQLTENAYETREMEPNDGLQTSPPAGSALESAKPKRGKRVKDPKATTQTAANKRGP 185
**999998888899**************9976679999********************************************************* PP
GAGA_bind 173 kskkkvkkesader........................skaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvy 242
k+++kvkkes+d+ sk+++ks+++ +ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+y
Csa18g012440.1 186 KNQRKVKKESEDDLtkimfvktthdyteedsskhiligSKSDWKSQEMvGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMY 280
**********984358********************************88********************************************* PP
GAGA_bind 243 PLPvstkrrgaRiagrKmSqgafkklLekLaa 274
PLP+ +++r+aR++grKmS++af+klL++Laa
Csa18g012440.1 281 PLPALPNKRHARVGGRKMSGSAFNKLLSRLAA 312
******************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MDDGGHRENG RHKAAPGQWM MQHQPSMKQV MSIIAERDAA IQERNLAISE KKAAIAERDM 60
AFLQRDTAIA ERNNAIMERD SALTALQYRE NSMVTAAAAN MSAPGCQMSR GVKHMHHPHM 120
HHHHQQHHIP QLTENAYETR EMEPNDGLQT SPPAGSALES AKPKRGKRVK DPKATTQTAA 180
NKRGPKNQRK VKKESEDDLT KIMFVKTTHD YTEEDSSKHI LIGSKSDWKS QEMVGLNQVV 240
YDETTMPPPV CSCTGVLRQC YKWGNGGWQS SCCTTTLSMY PLPALPNKRH ARVGGRKMSG 300
SAFNKLLSRL AA
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK221752 | 0.0 | AK221752.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-54-A10. |
| GenBank | AK227246 | 0.0 | AK227246.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL11-01-O04. |
| GenBank | AY088564 | 0.0 | AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence. |
| GenBank | AY380572 | 0.0 | AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds. |
| GenBank | BT024874 | 0.0 | BT024874.1 Arabidopsis thaliana At5g42520 mRNA, complete cds. |
| GenBank | EF123108 | 0.0 | EF123108.1 Arabidopsis thaliana GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
