PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g010690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 198aa MW: 21220.8 Da PI: 9.0981 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.8 | 4e-05 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+Fs+ L H +H Csa18g010690.1 74 YKCGVCDKTFSSYQALGGHKASH 96 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 6.4E-4 | 74 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.014 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.7E-12 | 74 | 98 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.014 | 74 | 101 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.01E-8 | 74 | 140 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.88 | 118 | 140 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 5.3E-12 | 118 | 142 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.016 | 118 | 140 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 120 | 140 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MALEALNSPR LVEEATRFHG FEQWTRGKKR SKRSRSGHHD HGLTEEEYLA FCLMLLASDR 60 GDLDAVTAAK KPGYKCGVCD KTFSSYQALG GHKASHRSLN GGGDKDKSMA VSAAVKSHVC 120 SICLKSFATG QALGGHKRCH YEGNGNGGVS NSEGVGSTSH VSSNSHRGFD LNIRQVREIS 180 PDDEVMSPMA AKKPCLK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor probably involved in abiotic stress responses. Binds DNA in a sequence-specific manner and can repress the transactivation activity of other transcription factors. {ECO:0000269|PubMed:15333755}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g010690.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), ethylene, salt, cold and heat. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010481898.1 | 1e-145 | PREDICTED: zinc finger protein AZF3-like | ||||
Swissprot | Q9SSW0 | 2e-98 | AZF3_ARATH; Zinc finger protein AZF3 | ||||
TrEMBL | R0GT27 | 1e-118 | R0GT27_9BRAS; Uncharacterized protein | ||||
STRING | XP_010481898.1 | 1e-144 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1211 | 28 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43170.1 | 1e-80 | zinc-finger protein 3 |
Publications ? help Back to Top | |||
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