PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g010680.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 177aa    MW: 19882.1 Da    PI: 7.3496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g010680.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.68.1e-071501711030
                     HHHHHHHHHHHHHHHCTSCC.C CS
             HLH  10 rrRRdriNsafeeLrellPk.a 30 
                     r+RR+riN+++ +L++l+P+ +
  Csa18g010680.1 150 RKRRERINDRLKTLQSLVPNgR 171
                     9******************844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.883140176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-6145173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-5149171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-4149169No hitNo description
PfamPF000102.5E-4150169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAMENGALVD GEFESLLGIF NFDQCSSDDT IFYNAPSEID AFSSDEFFPF GTSLQRNYPA  60
VLDGSSYQMN LYVDSRQELM KPMKKQKLSS ENNLVTEPNT AWRDGQSLSS FNSSDDEKSL  120
GLTANTSKSL TRKAKPNKRI ASDPQSLYAR KRRERINDRL KTLQSLVPNG RYKHNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g010680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019088044.11e-115PREDICTED: transcription factor bHLH139-like isoform X2
SwissprotQ3E7L78e-94BH139_ARATH; Transcription factor bHLH139
TrEMBLA0A178UKI53e-91A0A178UKI5_ARATH; Uncharacterized protein
STRINGXP_010494289.11e-106(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41322257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43175.13e-96bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]