PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g010610.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YC
Protein Properties Length: 124aa    MW: 13950.1 Da    PI: 10.2037
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g010610.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC51.13e-1611901997
           NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                     e+P+ r+kki+k d+d+++i +ea  l++ + elf+  l+ +s + a e+kr+t+    + +av+r + + dfl+d  p
  Csa18g010610.1 11 PEFPIGRVKKIMKLDQDINKINSEALHLITYSTELFLHFLAEKSAVVAVEKKRKTVSLDHLRTAVKRHQpTSDFLLDSLP 90
                    589**************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.44E-19693IPR009072Histone-fold
PfamPF008081.2E-201275IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.4E-211390IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MAEDQESPIR PEFPIGRVKK IMKLDQDINK INSEALHLIT YSTELFLHFL AEKSAVVAVE  60
KKRKTVSLDH LRTAVKRHQP TSDFLLDSLP LPSQPGRHTK TASDKKAPPP PPVGTRRIDD  120
FFQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g010610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019095445.14e-85PREDICTED: nuclear transcription factor Y subunit C-1-like
TrEMBLR0EZ142e-70R0EZ14_9BRAS; Uncharacterized protein
STRINGXP_010442051.18e-82(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128602530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.15e-56nuclear factor Y, subunit C13