PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g009600.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | HB-other | ||||||||
Protein Properties | Length: 1705aa MW: 191566 Da PI: 5.0224 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5e-18 | 24 | 80 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t+ qle+Le+ ++ ++yps++ r++L+ kl+L++rq ++WF+ rR k++k Csa18g009600.1 24 KSKRKMKTAAQLEVLETTYAAEPYPSEAIRADLSVKLNLSDRQLQMWFCHRRLKDRK 80 679****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-16 | 11 | 80 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.13E-15 | 18 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.244 | 21 | 81 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.7E-16 | 23 | 85 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.79E-13 | 24 | 81 | No hit | No description |
Pfam | PF00046 | 1.2E-15 | 24 | 80 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 15.784 | 533 | 592 | IPR018501 | DDT domain |
SMART | SM00571 | 2.0E-22 | 533 | 592 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.7E-16 | 534 | 589 | IPR018501 | DDT domain |
Pfam | PF05066 | 1.1E-15 | 715 | 783 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 1.6E-6 | 911 | 952 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 3.9E-13 | 1084 | 1156 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1705 aa Download sequence Send to blast |
MEGGSDEATV KNTKTTPEEG GESKSKRKMK TAAQLEVLET TYAAEPYPSE AIRADLSVKL 60 NLSDRQLQMW FCHRRLKDRK STTTTPSSKR QRKELITTPM AVESPKPAVN AADLVAGNEF 120 DSRRAARVSG GSGSGVVTVV RRFNEPSSAE VRAVGYMEAQ LGERLRDNGP ILGMEFDPLP 180 PGAFGMPIEM PSHRKASRQA FETSLYVRSD VKPNKDVRPI REYQFLPDLP SSRTDHSERV 240 SPSHHYGVPL DASVMRGSVV SAGHRDDYKI SPQIPNLNLA TRQGKPGHVY SPNLPEYDSP 300 YQKSYMDTPA QRNLNDHPIH EDPFVKSERE VGNEDEDDDA LQLERKRKNE EARISRELEA 360 HEKRIRRELE KQDMLRRKRE EQLRKEMERQ DRERRKEEER LLRERQREEE RFMKEQMREL 420 QRREKFLKKE TMRAEKMRQK EEMRREKEVA RLKAANERAI ARKIAKESME LIEDERLELM 480 EVAALTKGLP SMLALDFETL QNLDEYRDKQ VLFPPSSVKL KKPFTVKPWN GSDENVANLL 540 MVWRFLITFA DVFGLWPFTL DEFAQAFHDY DPRLMGEIHI VLLKTIIKDI EGVTRTLLTG 600 VGANQNTASN PGGGHPHVVE GAYAWGFDIR SWRRNLNVFT WPEILRQLAL SAGLGPQLKK 660 RNIKTVSVHD ENEANDSENV IFNLRKGVAA ENAFAKMQER GLSNPKRSRH RLTPGTVKFA 720 AFHVLSLEGE KGLTILDVAE KIQKSGLRDL TTSRTPEASV AAALSRDTKL FERVAPSTYC 780 VRASYRKEAG GAETILAEAR ERIRAFKSGI TDVEDVDDAD RDEDSESDVG DDPEMDLNPK 840 KEDPDALDIE NSVKVESVLE NGKTKAGLPL TPSLPEDIKD EKRDDILVDQ SLEDAVANDA 900 DSACFDESKL GEQWVQGLVE GDYSNLSSEE RLNALVALIG IAIEGNTIRV ALEERLEVAS 960 ALKKQMWGEV QLDKRWKEES LLRANYLSYP TAKPGLNSST PASGNQENSS ADVTPISSQD 1020 PLGLPQMDVN NVIAGPSLQL QDNVSGMENL QYQQQGGYTA DRERLRAQLK AYVGYKAEEL 1080 YVYRSLPLGQ DRRRNRYWRF SASASRNDPG CGRIFVELQD GRWRLIDSEE DFDYLVKSLD 1140 VRGVRESHLH FMLLKIEASF KEAVRKNVEA NPGLCSVSSS LDFDTAEIST TFKIELGDSN 1200 AIERCSVLQR FQSFEKWMWD NMLHPGALSA FKYGAKQSSP LFRICRTCAE LHLVEDICCP 1260 SCGQMRASPD VGELCFADQV AQLGDYSRGG DTGFILRSSI SSPLRIRLLK IQLALVEASL 1320 PPEGLEAFWT ENHRKSWGLK LLSSSSPEEL NQVLTTLEVA LKRDFLSSNF ETTSELLGLP 1380 EEALASDSTC VVNVLPWIPK TTGGVALRLF EFDSAIVYTP DQNNDPLKDK ESEDLVGLET 1440 NLLRNVPEKD VMETPVQGGY TQEDNWIDPG VGGVSSSGRG GRPARGRGRP RSRGSGGNGK 1500 KPAVSVSSSR PPRGAANTNG ETMLRPRAQP RSKKNGRRSS TKGRKRPTKG TLGISNEVVG 1560 GRLAKEVAVT ARTTLPDNED DWIETPELQD DDGEASSSGR SFQYKDYDDD EVMAPMDDFD 1620 DAGESSKLVG RGEFSLHSDV EYEEEEEDEE EEEEEDMNTK MDVNYINDDS FGRREQPEIS 1680 NDAARKRFMF DDPDLTSSSS SDYR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 1532 | 1546 | KKNGRRSSTKGRKRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g009600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB005239 | 0.0 | AB005239.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MLN1. | |||
GenBank | CP002688 | 0.0 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010481770.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT2-like | ||||
Swissprot | Q9FFH1 | 0.0 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | R0EUK2 | 0.0 | R0EUK2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010481770.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9601 | 25 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |