PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g006010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

BES1

Protein Properties

Length: 666aa MW: 75188.3 Da PI: 6.0504

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g006010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	163.2	1.6e-50	61	210	1	145
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq 95 gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ +p+ ++++ ++s+es+l+ Csa18g006010.1 61 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQPN----HVVQYPTRSIESPLS 151 6899**********************************************************************....899999999999999 PP DUF822 96 .sslkssalaspvesysaspksssfpspssldsislasa........asllpvlsvlsl 145 s+lk++a+a+ +++++++ ++ +sp+slds+ +a++ + +p++sv +l Csa18g006010.1 152 sSTLKNCAKATLECQQHSVLRIDENLSPVSLDSVVIAENdhpgngryTGASPITSVGCL 210 899*******************************99988888877777777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.3E-48	62	208	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	2.43E-160	229	663	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	3.3E-168	232	662	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	6.8E-82	238	627	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.0E-54	268	282	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.0E-54	289	307	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.0E-54	311	332	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.0E-54	404	426	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.0E-54	477	496	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.0E-54	511	527	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.0E-54	528	539	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.0E-54	546	569	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.0E-54	584	606	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 666 aa Download sequence Send to blast
MHTLNNNTGS QDPNLDPIPS DPDQFPNRNL NHPQTRRPRG FAATAAAASI VPTDSGGGGG 60 GGKGKREREK EKERTKLRER HRRAITSRML AGLRQYGNFP LPARADMNDV IAALAREAGW 120 SVDADGTTYR QSHQPNHVVQ YPTRSIESPL SSSTLKNCAK ATLECQQHSV LRIDENLSPV 180 SLDSVVIAEN DHPGNGRYTG ASPITSVGCL EANQLIQDVH STEPRNDFTE SFYVPVYAML 240 PVGIIDSFGQ LVDPDGVRQE LSYMKSLNVD GVVIDCWWGI VEGWNPQKYV WSGYRELFNL 300 IRDFKLKLQV VMAFHEYGGN VSGNVIISLP QWVLEIGKDN PDIFFTDREG RRSFECLNWS 360 IDKERVLHGR SGIEVYFDFM RSFRSEFDDL FVEGLIASVE IGLGASGELK YPSFPERMGW 420 IYPGIGEFQC YDKYSQLNLQ KEAKSRGFAF WGKGPENAGQ YNSQPHETGF FQERGEYDSY 480 YGRFFLNWYS QLLIGHAENV LSLANLAFEE TKIIVKIPAI YWSYKTASHA AELTAGYYNP 540 SNRDGYSPLF ETLKKYSVTV KFVCPGPQMS PNEHEEALAD PEGLSWQVIN AAWDKQLLIG 600 GENAITCFDR EGCMRLIDIA KPRNHPDSYH FSFFTYRQPS HLVQGYTCFP DLDYFIKRMH 660 GDIQR*

Sequence ? help Back to Top

Protein Sequence Length: 666 aa Download sequence Send to blast

MHTLNNNTGS QDPNLDPIPS DPDQFPNRNL NHPQTRRPRG FAATAAAASI VPTDSGGGGG  60
GGKGKREREK EKERTKLRER HRRAITSRML AGLRQYGNFP LPARADMNDV IAALAREAGW  120
SVDADGTTYR QSHQPNHVVQ YPTRSIESPL SSSTLKNCAK ATLECQQHSV LRIDENLSPV  180
SLDSVVIAEN DHPGNGRYTG ASPITSVGCL EANQLIQDVH STEPRNDFTE SFYVPVYAML  240
PVGIIDSFGQ LVDPDGVRQE LSYMKSLNVD GVVIDCWWGI VEGWNPQKYV WSGYRELFNL  300
IRDFKLKLQV VMAFHEYGGN VSGNVIISLP QWVLEIGKDN PDIFFTDREG RRSFECLNWS  360
IDKERVLHGR SGIEVYFDFM RSFRSEFDDL FVEGLIASVE IGLGASGELK YPSFPERMGW  420
IYPGIGEFQC YDKYSQLNLQ KEAKSRGFAF WGKGPENAGQ YNSQPHETGF FQERGEYDSY  480
YGRFFLNWYS QLLIGHAENV LSLANLAFEE TKIIVKIPAI YWSYKTASHA AELTAGYYNP  540
SNRDGYSPLF ETLKKYSVTV KFVCPGPQMS PNEHEEALAD PEGLSWQVIN AAWDKQLLIG  600
GENAITCFDR EGCMRLIDIA KPRNHPDSYH FSFFTYRQPS HLVQGYTCFP DLDYFIKRMH  660
GDIQR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-121	233	662	11	444	Beta-amylase
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g006010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117140	0.0	AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBank	BT006482	0.0	BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010481609.1	0.0	PREDICTED: beta-amylase 8-like
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	D7MUR1	0.0	D7MUR1_ARALL; Beta-amylase
STRING	XP_010481609.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10888	28	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.1	0.0	beta-amylase 2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]