PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g005500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 350aa    MW: 40065.3 Da    PI: 5.3496
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g005500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.26.1e-34151062102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+ye+++d++ ++++swsen++sf+v+++ ef++++Lp++Fkh+nf+SF+RQLn+YgF+kv+ e+         weF+++ F +g+  l+++
  Csa18g005500.1  15 FLTKTYEMVDDDSSDSVVSWSENNKSFIVKNPAEFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEK---------WEFSNDDFVRGRPYLMKN 100
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Csa18g005500.1 101 IHRRKP 106
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.53E-3410104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.7E-5811104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3612104IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-3015104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-191538IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-195365IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405478IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDESSHGGSS SLPPFLTKTY EMVDDDSSDS VVSWSENNKS FIVKNPAEFS RDLLPRFFKH  60
KNFSSFIRQL NTYGFRKVDP EKWEFSNDDF VRGRPYLMKN IHRRKPVHSH SLVNLQTQNP  120
LTESERRSME DQIERLKREK EGLLVELQSQ EQERKDFEMQ VTTLKDRLQQ MEQHQKSIVA  180
YVSQVLGKPG LSLNLENHEI RKRRVPESSL PSSRSHVEQV ENLESSLTFW ENLVSESYEK  240
SGVQSSSSMD LDAAESSLSM GDTRPKSSKI DMNLEPPVTV TVAVAAPKAG VNDDFWEQCL  300
TENPGSTEQQ EVQSERKDVD NDNGDNKIGN QRTFWWNSGN VNNNITKKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-22710412120Heat shock factor protein 1
5d5u_B1e-22810422129Heat shock factor protein 1
5d5v_B1e-22810422129Heat shock factor protein 1
5d5v_D1e-22810422129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin. {ECO:0000269|PubMed:18381353}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g005500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat and cold stresses and the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D, auxin analog). {ECO:0000269|PubMed:18381353}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2290580.0AK229058.1 Arabidopsis thaliana mRNA for heat shock transcription factor, complete cds, clone: RAFL16-34-M14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481538.10.0PREDICTED: heat stress transcription factor A-4c-like
RefseqXP_010481539.10.0PREDICTED: heat stress transcription factor A-4c-like
RefseqXP_019095707.10.0PREDICTED: heat stress transcription factor A-4c-like
SwissprotQ9FK720.0HFA4C_ARATH; Heat stress transcription factor A-4c
TrEMBLR0GR490.0R0GR49_9BRAS; Uncharacterized protein
STRINGXP_010481538.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28532868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.10.0HSF family protein
Publications ? help Back to Top
  1. Faragó D,Sass L,Valkai I,Andrási N,Szabados L
    PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.
    Front Plant Sci, 2018. 9: p. 219
    [PMID:29520290]