PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g003340.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 330aa    MW: 36790.6 Da    PI: 7.1899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g003340.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.5e-1488139155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+ +N+ ++ Lr+l+P++    + K + a+i+  A+++Ik+L+
  Csa18g003340.1  88 QRMTHIAVERNRRRLMNQHLSVLRSLMPQP---FAHKGDQASIVGGAIDFIKELE 139
                     79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-1586151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-1286141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.17E-1286142No hitNo description
PROSITE profilePS5088815.15487138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-1188139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-993144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MTLEALSSNG LLNFLLSETL SPTPFKSLVD LEPLPGNDVI ISKNTIMEDI SRQESPPPPR  60
QPPATNRGKK RRRRKPRVCK NEEEAENQRM THIAVERNRR RLMNQHLSVL RSLMPQPFAH  120
KGDQASIVGG AIDFIKELEH KLLSLEAQKL HNAKLNQSVT TSTSQDSNSE PENPHQQSPL  180
SISQFFLHSY DPSQENRNGS TSSVKTALED LEVTLIETHA NIRILSRRRG FRWSTMATSR  240
PPQLSRLVAA LQSLSLSVLH LSVTTMDTYA IYSISAKVEE SCQLSSVDDI AGAVHHMLSI  300
IEEEPICCSS MSELPFDFSL NHTNATHSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16874KKRRRRK
26875KKRRRRKP
36974KRRRRK
47076RRRRKPR
58899RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g003340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937800.0AB493780.1 Arabidopsis thaliana At5g46690 mRNA for hypothetical protein, partial cds, clone: RAAt5g46690.
GenBankAK2216130.0AK221613.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL07-91-M02.
GenBankBT0256630.0BT025663.1 Arabidopsis thaliana At5g46690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481425.10.0PREDICTED: transcription factor bHLH71-like
SwissprotQ56XR00.0BH071_ARATH; Transcription factor bHLH71
TrEMBLC0SVS70.0C0SVS7_ARATH; Uncharacterized protein At5g46690 (Fragment)
STRINGXP_010481425.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.11e-177beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]