PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g003140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 754aa    MW: 83785.8 Da    PI: 4.901
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g003140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox651e-2058113156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF++n++p+ ++r++L+++lgL+ rqVk+WFqNrR+++k
  Csa18g003140.1  58 KKRYHRHTNRQIQEMEALFKENPHPDDKQRKRLSAELGLKPRQVKFWFQNRRTQMK 113
                     688999***********************************************998 PP
2START1463.6e-462654981206
                     HHHHHHHHHHHHHHHHC-TT-EEEE........EXCCTTEEEEEEESSS..........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS
           START   1 elaeeaaqelvkkalaeepgWvkss........esengdevlqkfeeskv.........dsgealrasgvvdmvlallveellddkeqWdetla. 77 
                     e+a ++ qel k+ + eep+W k            +n++e+++ f+             +  ea++a  vv+m++ +lv  +l+   +W+e++  
  Csa18g003140.1 265 EIAVSCVQELTKMCDTEEPLWIKKKsdkiggeiLCLNEEEYMKLFPW--PvenhnnkadFAREASKANSVVIMNSITLVDAFLNAD-KWSEMFCs 356
                     578899***************99997888776644566666666532..03455699999**************************.******99 PP

                     ...EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE..-TTS--..-TTSEE-EESSEEEEEEEECT CS
           START  78 ...kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvd..seqkppe.sssvvRaellpSgiliepksn 159
                        +a+t++ issg     g l lm+ae+q+lsplvp R+ +f+Ry +q  + g w+ivd  +d  ++q++p  + s    ++ pSg++i++++n
  Csa18g003140.1 357 ivaRAKTVQIISSGvsgasGSLLLMYAEFQVLSPLVPtREAYFLRYVEQnAENGNWAIVDFPIDsfHDQMQPPsTNSPHEYKRKPSGCIIQDMPN 451
                     999**********************************************99*********99883334444444666667779************ PP

                     CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     g+s+v wvehv+++++++h+ +   vksg+a+ga++w+  lqrqce+
  Csa18g003140.1 452 GYSQVKWVEHVEVDEKHVHETFAEYVKSGMAFGANRWLDVLQRQCER 498
                     *********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-2047116IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-2152122IPR009057Homeodomain-like
PROSITE profilePS5007117.58955115IPR001356Homeobox domain
SMARTSM003891.4E-1856119IPR001356Homeobox domain
CDDcd000862.42E-1958116No hitNo description
PfamPF000463.2E-1858113IPR001356Homeobox domain
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PROSITE profilePS5084843.863256501IPR002913START domain
SuperFamilySSF559616.32E-31258500No hitNo description
CDDcd088751.00E-107260497No hitNo description
SMARTSM002342.4E-26265498IPR002913START domain
PfamPF018521.2E-38266498IPR002913START domain
SuperFamilySSF559614.81E-13535729No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MMSMMMMMGD GTVEEMMENG SAGGSFGSGS EQAEDPKFGN ESDVNELQDD EQPPPAKKKR  60
YHRHTNRQIQ EMEALFKENP HPDDKQRKRL SAELGLKPRQ VKFWFQNRRT QMKAQQDRTE  120
NAMLRAENAN LKSENCHLQG ELRCLSCPSC GGPTVLGDIP FNELHIENCR LREELDRICC  180
ITSRYTGRPM QSMPSSQPLI DPSSTLPHHQ PSLELDMSVY AGNFPEHSCA DMMMLPPQDT  240
TCFFPDQTVN NNMLLAEEEK VIAMEIAVSC VQELTKMCDT EEPLWIKKKS DKIGGEILCL  300
NEEEYMKLFP WPVENHNNKA DFAREASKAN SVVIMNSITL VDAFLNADKW SEMFCSIVAR  360
AKTVQIISSG VSGASGSLLL MYAEFQVLSP LVPTREAYFL RYVEQNAENG NWAIVDFPID  420
SFHDQMQPPS TNSPHEYKRK PSGCIIQDMP NGYSQVKWVE HVEVDEKHVH ETFAEYVKSG  480
MAFGANRWLD VLQRQCERIA SLMARNITDL GGYDIISRSE EKHDEVITED ALSETSKDTV  540
RITTRKMCEP GQPTGVVLSA VSTTWLPFTH HQVFDLIRDQ HHQSLLEVLF NGNSPHEVAH  600
IANGSHPGNC ISLLRINVAS NSWHNVELML QESSIDNSGS LIVYSTVDVD SIQLAMNGED  660
SSNIPILPLG FSIVPVIPPE GISVNSNSPP SCLLTVAIQV LASNVPTAKP NLSTVTTINN  720
HLCATVNQIT SALTSTVTPA IASSAAVSKQ EAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18388DKQRKR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g003140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0133941e-173AB013394.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD22.
GenBankCP0026881e-173CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481400.10.0PREDICTED: homeobox-leucine zipper protein HDG5
SwissprotQ9FJS20.0HDG5_ARATH; Homeobox-leucine zipper protein HDG5
TrEMBLR0GUB60.0R0GUB6_9BRAS; Uncharacterized protein
STRINGXP_010481400.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43562548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Lung SC, et al.
    Arabidopsis ACYL-COA-BINDING PROTEIN1 interacts with STEROL C4-METHYL OXIDASE1-2 to modulate gene expression of homeodomain-leucine zipper IV transcription factors.
    New Phytol., 2018. 218(1): p. 183-200
    [PMID:29288621]