PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g002730.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 474aa    MW: 52875.6 Da    PI: 7.2276
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g002730.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.13.6e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Csa18g002730.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41
                    ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.7E-11155IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-12546No hitNo description
CDDcd002029.64E-18663No hitNo description
PfamPF003206.0E-14741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139194.1E-8242328IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLVNYTPLHS RAEGDEIEIE  60
DRRAHQRVMI KGMSLNKKIP KRKTYQENFT VKRANLEFST GFKRKALDED ASNRSSSGSV  120
VSNSESCAQS NAWETTFPCK RRTGVGRPKA ASSVEKLTKD LYTILQEQQS SCLSGSSECD  180
LLFENETPML LGHGSVLMRD PHSSGAREEE SEASSFLVES SKSSSVHSAK FGGKAIKQEL  240
LKRSKSQVLG RHSLLLCSID LKDVFNFNEF IEKFTEEEQK KLMKLLPQVD SVDRPDSLRS  300
MFESSQFKEN FSLFQQLVAD GVFETSSSSG SKLEDIKTLA KLALSDPNKS HLLESYYMLK  360
RKEIEDSVTT PSRVSNLSPS NNNSLVTIER PCESLNQNFS ETRVVMRSQV MKIRSNHIKT  420
EEILENSVSS FNPMSCGGSL VFSYEDNDIS DQDLLLDVPS NGSFPQAELL HMI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g002730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0202590.0BT020259.1 Arabidopsis thaliana At5g47140 gene, complete cds.
GenBankBT0204500.0BT020450.1 Arabidopsis thaliana At5g47140 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481362.10.0PREDICTED: GATA transcription factor 27-like isoform X2
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLD7MPX30.0D7MPX3_ARALL; Zinc finger family protein
STRINGXP_010481361.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27