PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g099250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 312aa    MW: 35241.4 Da    PI: 6.5054
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g099250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+ +++++G g+W+++++  g+ R++k+c++rw +yl
   Csa17g099250.1 14 KGLWSPEEDEKLLSYITKHGHGCWSSVPKLTGLERCGKSCRLRWTNYL 61
                     678*******************************************97 PP
2Myb_DNA-binding46.21.1e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++ eE++l+v++++ lG++ W+ Ia++++ gRt++++k+ w++
   Csa17g099250.1  67 RGAFSSEEQDLIVELHAVLGNR-WSQIAARLP-GRTDNEIKNLWNS 110
                      89********************.*********.*********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.3E-27664IPR009057Homeodomain-like
PROSITE profilePS5129425.143965IPR017930Myb domain
SuperFamilySSF466891.98E-2912108IPR009057Homeodomain-like
SMARTSM007171.3E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
CDDcd001671.80E-111761No hitNo description
Gene3DG3DSA:1.10.10.609.8E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129419.75466116IPR017930Myb domain
SMARTSM007175.5E-1266114IPR001005SANT/Myb domain
PfamPF002493.5E-1367110IPR001005SANT/Myb domain
CDDcd001671.36E-869109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MKRHSCCYKQ KLRKGLWSPE EDEKLLSYIT KHGHGCWSSV PKLTGLERCG KSCRLRWTNY  60
LRPDLKRGAF SSEEQDLIVE LHAVLGNRWS QIAARLPGRT DNEIKNLWNS CIKKKLRQKG  120
IDPITHKPLS DVYKDTNISD NHNSTSFSSK SNQDFFVKEP SDYSDYLAFE KFNSNSVSIV  180
NSLSPVSLTQ FNTDGSVSTT GFETQICVKA SIVLLPPPDN TISGEDHVQV TEPTWESNCG  240
TASHLDNPGL EEIKWSDEYL NESLLSNPVY VKSETDFNAN ISFPWSQNQN QACDVFPKDL  300
QRMAFSFGET L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g099250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480292.10.0PREDICTED: transcription factor MYB86-like
SwissprotQ8VZQ21e-126MYB61_ARATH; Transcription factor MYB61
TrEMBLD7KC560.0D7KC56_ARALL; AtMYB50
STRINGXP_010480292.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G57560.10.0myb domain protein 50
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]