PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g098200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NF-YC | ||||||||
Protein Properties | Length: 219aa MW: 24414.3 Da PI: 4.7457 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.6 | 5.9e-56 | 49 | 152 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql+sfwe+q iek+tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaavtrtdifdfl Csa17g098200.1 49 QLQSFWETQfkeIEKTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAVTRTDIFDFL 143 89*****999999********************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l Csa17g098200.1 144 VDIVPREDL 152 ******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 4.68E-33 | 29 | 143 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 6.1E-38 | 63 | 135 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.2E-22 | 71 | 134 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MDQQGQSSAM NYGSNPYQTN PMTTTAPAGS DHPAYHQIHQ QQQQQLTQQL QSFWETQFKE 60 IEKTTDFKNH SLPLARIKKI MKADEDVRMI SAEAPVVFAR ACEMFILELT LRSWNHTEEN 120 KRRTLQKNDI AAAVTRTDIF DFLVDIVPRE DLRDEVLGGV GAEAATASGY PYGYLPPGTA 180 PIGNPGMVMG NPGAYPPNAY MGQPMWQQQA PEQQDPDN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-65 | 56 | 149 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 127 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g098200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC064840 | 0.0 | AC064840.2 Arabidopsis thaliana chromosome I BAC T24C10 genomic sequence, complete sequence. | |||
GenBank | AC069144 | 0.0 | AC069144.9 Arabidopsis thaliana chromosome 1 BAC F14C21 genomic sequence, complete sequence. | |||
GenBank | AY062775 | 0.0 | AY062775.1 Arabidopsis thaliana Unknown protein (At1g54830; T22H22.22) mRNA, complete cds. | |||
GenBank | AY081654 | 0.0 | AY081654.1 Arabidopsis thaliana unknown protein (At1g54830) mRNA, complete cds. | |||
GenBank | AY087517 | 0.0 | AY087517.1 Arabidopsis thaliana clone 36272 mRNA, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T22H22 | 0.0 | AC005388.1 Sequence of BAC T22H22 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019094980.1 | 1e-164 | PREDICTED: nuclear transcription factor Y subunit C-3 | ||||
Swissprot | Q9ZVL3 | 1e-143 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A178WGU5 | 1e-141 | A0A178WGU5_ARATH; NF-YC3 | ||||
STRING | XP_010480199.1 | 1e-164 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 1e-132 | nuclear factor Y, subunit C3 |