PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g098180.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 302aa    MW: 34457.7 Da    PI: 6.5858
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g098180.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12129180155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+ +N+ ++ Lr+l+P +   + ++ + a+i+  ++++I++L+
  Csa17g098180.1 129 QRMTHIAVERNRRKMMNEYLSVLRSLMPDS---YVQRCDQASIVGGTINFIRELE 180
                     79****************************...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.8E-13128184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.09E-14128191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.135128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-10128184No hitNo description
PfamPF000105.2E-10129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-7134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MALEGVFLQH VNIYSYNGKE AYSNLYIEDE PHFYDLQASL TFLDNQTENY NSTFLQEDHY  60
YEDTTTFLHQ PLPEIAISEA KITPNGNSSG SPNCDMRYHR DKEIDTSGSK KATRRRTRVK  120
KNKEEINNQR MTHIAVERNR RKMMNEYLSV LRSLMPDSYV QRCDQASIVG GTINFIRELE  180
HRLHHLNNNG EQNEKSLSDG DIDISSATPF SDAFKLPQYS MGSSSVSENV VVDNALADIE  240
VSLVESHASL KIRSRRRPKL LLNLVSALQS LGFIILHLNV STVSDFILYC FSTKVRFCFN  300
P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129140RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g098180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480197.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9C7T43e-57BH096_ARATH; Transcription factor bHLH96
TrEMBLD7KPZ41e-180D7KPZ4_ARALL; Uncharacterized protein
STRINGXP_010480197.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142991821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-49bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]