PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g097090.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 533aa MW: 61614 Da PI: 6.3486

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g097090.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	176.8	6.1e-55	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yL +kv+g+ +el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd++v Csa17g097090.1 6 LPPGFRFHPTDEELVAYYLDRKVNGRAIEL-EIIPEVDLYKCEPWDLPeKsFLPGNDMEWYFYSTRDKKYPNGSRTNRATRAGYWKATGKDRTVE 99 79**************************.99**********95334455788********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s k+ ++g+kktLv+y+grap+g +t+Wvmheyrl Csa17g097090.1 100 S-KKIKMGMKKTLVYYRGRAPHGLRTNWVMHEYRL 133 9.9999*************************98 PP
2	NAM	171.9	2e-53	237	362	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 GfrFhPtdeelv +yL +kv+g+ +el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd++v s Csa17g097090.1 237 HGFRFHPTDEELVAYYLDRKVNGRAIEL-EIIPEVDLYKCEPWDLPeKsFLPGNDMEWYFYSTRDKKYPNGSRTNRATRAGYWKATGKDRTVES- 329 6*************************.99**********95334455788*********************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ ++g+kktLv+y+grap+g +t+Wvmheyrl Csa17g097090.1 330 KKIKMGMKKTLVYYRGRAPHGLRTNWVMHEYRL 362 9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-62	3	153	IPR003441	NAC domain
PROSITE profile	PS51005	59.639	6	153	IPR003441	NAC domain
Pfam	PF02365	1.2E-28	7	133	IPR003441	NAC domain
PROSITE profile	PS51005	56.812	235	382	IPR003441	NAC domain
SuperFamily	SSF101941	6.67E-60	237	382	IPR003441	NAC domain
Pfam	PF02365	1.2E-27	237	362	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKVNG RAIELEIIPE VDLYKCEPWD LPEKSFLPGN 60 DMEWYFYSTR DKKYPNGSRT NRATRAGYWK ATGKDRTVES KKIKMGMKKT LVYYRGRAPH 120 GLRTNWVMHE YRLTNAPSSS LKESYALCRV FKKNIQIPKR KGEEEDAEEE STSIGKYEEE 180 EKEKKWRKFD GNIEDESLKR ASAETSSSEL TQGVLVDEAN SSSIFALHFS SSLLDDHGFR 240 FHPTDEELVA YYLDRKVNGR AIELEIIPEV DLYKCEPWDL PEKSFLPGND MEWYFYSTRD 300 KKYPNGSRTN RATRAGYWKA TGKDRTVESK KIKMGMKKTL VYYRGRAPHG LRTNWVMHEY 360 RLTNAPSSSL KESYALCRVF KKNIQIPKRK GEEEDAEEES TSIGKYEEEE KEKKWRKFDG 420 NIEDESLKRA SAETSSSELT QGVLVDEANS SSIFALHFSS SLLDDHGNLF SNYTHQHQLP 480 YHPPLQLQDF PQLSMNEADI MSTIQQDFQC RDSMNGTLDE IFFSSATFPA SL*

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence Send to blast

MAPMSLPPGF RFHPTDEELV AYYLDRKVNG RAIELEIIPE VDLYKCEPWD LPEKSFLPGN  60
DMEWYFYSTR DKKYPNGSRT NRATRAGYWK ATGKDRTVES KKIKMGMKKT LVYYRGRAPH  120
GLRTNWVMHE YRLTNAPSSS LKESYALCRV FKKNIQIPKR KGEEEDAEEE STSIGKYEEE  180
EKEKKWRKFD GNIEDESLKR ASAETSSSEL TQGVLVDEAN SSSIFALHFS SSLLDDHGFR  240
FHPTDEELVA YYLDRKVNGR AIELEIIPEV DLYKCEPWDL PEKSFLPGND MEWYFYSTRD  300
KKYPNGSRTN RATRAGYWKA TGKDRTVESK KIKMGMKKTL VYYRGRAPHG LRTNWVMHEY  360
RLTNAPSSSL KESYALCRVF KKNIQIPKRK GEEEDAEEES TSIGKYEEEE KEKKWRKFDG  420
NIEDESLKRA SAETSSSELT QGVLVDEANS SSIFALHFSS SLLDDHGNLF SNYTHQHQLP  480
YHPPLQLQDF PQLSMNEADI MSTIQQDFQC RDSMNGTLDE IFFSSATFPA SL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-52	1	383	12	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-52	1	383	12	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-52	1	383	12	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-52	1	383	12	166	NO APICAL MERISTEM PROTEIN
3swm_A	4e-52	1	383	15	169	NAC domain-containing protein 19
3swm_B	4e-52	1	383	15	169	NAC domain-containing protein 19
3swm_C	4e-52	1	383	15	169	NAC domain-containing protein 19
3swm_D	4e-52	1	383	15	169	NAC domain-containing protein 19
3swp_A	4e-52	1	383	15	169	NAC domain-containing protein 19
3swp_B	4e-52	1	383	15	169	NAC domain-containing protein 19
3swp_C	4e-52	1	383	15	169	NAC domain-containing protein 19
3swp_D	4e-52	1	383	15	169	NAC domain-containing protein 19
4dul_A	4e-52	1	383	12	166	NAC domain-containing protein 19
4dul_B	4e-52	1	383	12	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g097090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176278	0.0	AK176278.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL23-20-J17.
GenBank	BT010446	0.0	BT010446.1 Arabidopsis thaliana At1g54330 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010462486.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9FFI5	6e-78	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A178WA62	1e-180	A0A178WA62_ARATH; NAC020
TrEMBL	Q67Z40	1e-180	Q67Z40_ARATH; NAC domain containing protein 20
STRING	XP_010462486.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8123	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-168	NAC domain containing protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]