PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g095950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 324aa MW: 36357.2 Da PI: 7.431 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.1 | 1e-50 | 19 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhP+d+elv++yL ++ +++ ++ v+ +vd++k+ePwd+pk++ + k+wyf+s+rd+kyatg r+nrat++gyWkatgkd+++l+ Csa17g095950.1 19 LPPGFRFHPKDDELVCDYLMRRSLHHSnHKPPLVLIQVDLNKCEPWDIPKMACVGGKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRAILR 113 79*****************999877773444446999************8777799**************************************9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 kg+lvg++ktLvfy+grap+g+ktdWvmhe+rl Csa17g095950.1 114 -KGKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRL 146 .999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-60 | 7 | 173 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.786 | 19 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-26 | 20 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 324 aa Download sequence Send to blast |
METEEEMKIS SISMVEAKLP PGFRFHPKDD ELVCDYLMRR SLHHSNHKPP LVLIQVDLNK 60 CEPWDIPKMA CVGGKDWYFY SQRDRKYATG LRTNRATATG YWKATGKDRA ILRKGKLVGM 120 RKTLVFYQGR APRGRKTDWV MHEFRLQGSY QPPDHSLTSP KEDWVLCRVF HKNTEGVICR 180 DTTGSCFVET ASASLPPLMD PYINFDQEPS SYLSDDQHFI TNEHVPCFSN LSQNQTLNLT 240 NSVSELKTPC KNPNPLFTCG SAPATLTGLD SFCSSDQMVL RALLSQLTKI DGSLAAKDSQ 300 NYGEGSSESL LTDIGIPSTA WNC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-51 | 7 | 175 | 3 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g095950.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF198054 | 0.0 | AF198054.1 Arabidopsis thaliana NAC1 (NAC1) mRNA, complete cds. | |||
GenBank | AY085996 | 0.0 | AY085996.1 Arabidopsis thaliana clone 205648 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010480161.1 | 0.0 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 0.0 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | R0GNI1 | 0.0 | R0GNI1_9BRAS; Uncharacterized protein | ||||
STRING | XP_010480161.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 0.0 | NAC domain containing protein 1 |