PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g095120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 338aa    MW: 38323.2 Da    PI: 5.616
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g095120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.82.2e-21857251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +++++s  ++++s+R+ +i+ KAe LSvLC+++v+vi+++++g l+++++
  Csa17g095120.1  8 SSSSYSLTSTSLSNRLLTIFRKAEQLSVLCQIDVCVIYYGPEGDLKTFPN 57
                    799*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0058658IPR002100Transcription factor, MADS-box
PfamPF003197.2E-111655IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.2321759IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-111775IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MRPSSSSSSS SYSLTSTSLS NRLLTIFRKA EQLSVLCQID VCVIYYGPEG DLKTFPNEKE  60
KVRNMAMRYS RLDETLRSXS KKRTHLSEFL EENPNKRMKT SPSPEKKNVD VLKYPISDHY  120
SPDQISQLIQ SLELNLSTSQ QRLRFLLESH DKRKLLDQNL ASSSSQNHQT QSLNPSQQFS  180
LLVYNHGDNT FSQIPVSASN LSQDLSALLQ ESQLKNELMK QELSDYDQNI CMSDITNNSF  240
QHPCVSETEH YSGVQESVNN FGMQKEFYGY DQNMSSMANI NSISSSVSNT EAVQESVNNY  300
GLNQLMQKQF YGCDQNMSSM GNSGLMQHEV YGYDQNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18084KKRTH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g095120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481186.20.0PREDICTED: agamous-like MADS-box protein AGL75
SwissprotQ9FLL01e-107AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLD7MJI61e-119D7MJI6_ARALL; Predicted protein
STRINGXP_010481186.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.17e-97AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]