PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g094960.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 514aa MW: 58860.8 Da PI: 7.6892

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g094960.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	66.7	2.3e-21	7	57	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+++++s ++++s+R+ +i+ KAe LSvLC+++v+vi+++++g l+++++ Csa17g094960.1 7 KSSSSYSLTSTSLSNRLLTIFRKAEQLSVLCQIDVCVIYYGPEGDLKTFPN 57 789**********************************************95 PP
2	SRF-TF	33.2	6.6e-11	205	229	27	51
HHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 27 LSvLCdaevaviifsstgklyeyss 51 LSvLC+++v+vi+++++g l+++++ Csa17g094960.1 205 LSVLCQIDVCVIYYGPEGDLKTFPN 229 9**********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0021	6	58	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-10	16	55	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	10.232	17	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.06E-11	17	88	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.9E-5	203	227	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.46E-7	203	260	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MRPSSSKSSS SYSLTSTSLS NRLLTIFRKA EQLSVLCQID VCVIYYGPEG DLKTFPNEKE 60 KVRNMAMRYS RLNESLRSKK RTHLSEFLEE NPNKRMKTSP SPEKKNVDVL KYPISDHYSP 120 DQISQLIQSL ELNLSTSQQR LRFLLESHDK RKLLDHHHQS LASSSSQNHQ TQSLNPSQQF 180 SLLVYNHGDN TFSQIPVSAS NLKQLSVLCQ IDVCVIYYGP EGDLKTFPNE KEKVRNMAMR 240 YSRLNESLRS KKRTHLSEFL EENPNKRMKT SPSPEKKNVD VLKYPISDHY SPDQISQLIQ 300 SLELNLSTSQ QRLRFLLESH DKRKLLDHHH QSLASSSSQN HQTQSLNPSQ QFSLLVYNHG 360 DNTFSQIPVS ASNLSQDLSA LLQESHLKNQ LMKQELSDYD QNICMSDITN NSFQHPCVSE 420 TDHYSGVQES VNNFGMQKEF YGYDKNMSSM GNINSSSFQH PCVSNTEVVQ ESMNNYGMNQ 480 LMQKQFYGCD QNMSSMGNSG LMQHEVYGYD QNL*

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MRPSSSKSSS SYSLTSTSLS NRLLTIFRKA EQLSVLCQID VCVIYYGPEG DLKTFPNEKE  60
KVRNMAMRYS RLNESLRSKK RTHLSEFLEE NPNKRMKTSP SPEKKNVDVL KYPISDHYSP  120
DQISQLIQSL ELNLSTSQQR LRFLLESHDK RKLLDHHHQS LASSSSQNHQ TQSLNPSQQF  180
SLLVYNHGDN TFSQIPVSAS NLKQLSVLCQ IDVCVIYYGP EGDLKTFPNE KEKVRNMAMR  240
YSRLNESLRS KKRTHLSEFL EENPNKRMKT SPSPEKKNVD VLKYPISDHY SPDQISQLIQ  300
SLELNLSTSQ QRLRFLLESH DKRKLLDHHH QSLASSSSQN HQTQSLNPSQ QFSLLVYNHG  360
DNTFSQIPVS ASNLSQDLSA LLQESHLKNQ LMKQELSDYD QNICMSDITN NSFQHPCVSE  420
TDHYSGVQES VNNFGMQKEF YGYDKNMSSM GNINSSSFQH PCVSNTEVVQ ESMNNYGMNQ  480
LMQKQFYGCD QNMSSMGNSG LMQHEVYGYD QNL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	250	254	KKRTH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g094960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010481185.1	0.0	PREDICTED: agamous-like MADS-box protein AGL75, partial
Swissprot	Q9FLL0	1e-103	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	D7MJI6	1e-118	D7MJI6_ARALL; Predicted protein
STRING	XP_010481185.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	5e-90	AGAMOUS-like 75

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]