PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g094860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 468aa    MW: 52395.1 Da    PI: 8.4441
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g094860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26e-0599121123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ C+k F r  nL+ H r H
  Csa17g094860.1  99 FICEVCNKGFQRDQNLQLHKRGH 121
                     89******************988 PP
2zf-C2H214.20.00013176198123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  Csa17g094860.1 176 WKCEKCSKKYAVQSDWKAHAKTC 198
                     58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.73E-798121No hitNo description
Gene3DG3DSA:3.30.160.604.5E-698121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02699121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.82499121IPR007087Zinc finger, C2H2
PfamPF121713.6E-599121IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SMARTSM0035541141171IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-4164197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.73E-7171196No hitNo description
SMARTSM00355140176196IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MMMNRDMIFH HQQQQQQQVE ENMSNLTSAS GDQASVSSGN RTETSGSYIN QQQQQQQEQE  60
QCFVPQSSLK RKRNQPGNPD PEAEVMALSP KTLMATNRFI CEVCNKGFQR DQNLQLHKRG  120
HNLPWKLKQR SNKDVVRKKV YVCPEPGCVH SHPSRALGDL TGIKKHFFRK HGEKKWKCEK  180
CSKKYAVQSD WKAHAKTCGT KEYKCDCGTL FSRRDSFITH RAFCDALAEE SARAIPNTIL  240
IQSSVSPSPS HHDHHHHQTV QQNINFSSSS QNIIGNNNHL HHGPMKQEES QHHHFQNIPP  300
WLVSSNPNPN GNNGNLFPPL ASSAPNGRSN FHRSSPAMSA TALLQKAAQM GSKKSKTPEE  360
EERSSRSSSY NNLITTTMAA MMTSPPEPGY GFQDYYMMNH QHHGGGEAFN GSFVADKNEV  420
VDDGGGETRD FLGLRSLMSH NEILSFANNL GNCLNGSASE EQHSHQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-36172233364Zinc finger protein JACKDAW
5b3h_F2e-36172233364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125138KLKQRSNKDVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g094860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2271940.0AK227194.1 Arabidopsis thaliana mRNA for putative zinc finger protein, complete cds, clone: RAFL09-93-B07.
GenBankAY1504210.0AY150421.1 Arabidopsis thaliana putative zinc finger protein (At1g55110) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480027.10.0PREDICTED: protein indeterminate-domain 7
SwissprotQ8H1F50.0IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLR0ISA40.0R0ISA4_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010480027.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.10.0indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]