PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g092430.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 347aa MW: 39523 Da PI: 7.9301

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g092430.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.5	9.7e-20	8	57	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +++++s ++++ +R+ +i+ KAe LS+LC+++v+vi+++++g l+++++ Csa17g092430.1 8 SSSSYSLTSTSLNNRLLTIFRKAEQLSILCEIDVCVIYYGPQGDLKTFPN 57 6899********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00319	3.0E-10	16	55	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	9.951	17	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.62E-10	18	80	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MRPSSSPSSS SYSLTSTSLN NRLLTIFRKA EQLSILCEID VCVIYYGPQG DLKTFPNEKE 60 KVRNMAMRYS RLDESLRGKK RTHLSEFLEE NPNPNKRMKT SPSPKKNVDV LKYPIADHYS 120 PDQISQLIQS LELNLSTSQQ RLRFLLESHD KHKLLDHHHH QSLASSSSQN HQTQSLNPNP 180 RQFSLFMYNH GDNTLSQIPV SASNLSQDFS ALLQESQLKN QLMKHELSDY DHNISMSDIT 240 NNSFQHPCVS KTKHYSGVQE SVNNFGMNQK EFYGYDQNMC SMANINSSSS FQHPCVSNTK 300 AVQESVNNYG LNQLTQKQFY GCDQNMSSMG NSGLMQHQVY GYDQNQ*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MRPSSSPSSS SYSLTSTSLN NRLLTIFRKA EQLSILCEID VCVIYYGPQG DLKTFPNEKE  60
KVRNMAMRYS RLDESLRGKK RTHLSEFLEE NPNPNKRMKT SPSPKKNVDV LKYPIADHYS  120
PDQISQLIQS LELNLSTSQQ RLRFLLESHD KHKLLDHHHH QSLASSSSQN HQTQSLNPNP  180
RQFSLFMYNH GDNTLSQIPV SASNLSQDFS ALLQESQLKN QLMKHELSDY DHNISMSDIT  240
NNSFQHPCVS KTKHYSGVQE SVNNFGMNQK EFYGYDQNMC SMANINSSSS FQHPCVSNTK  300
AVQESVNNYG LNQLTQKQFY GCDQNMSSMG NSGLMQHQVY GYDQNQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	82	KKRTH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g092430.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010481140.2	0.0	PREDICTED: agamous-like MADS-box protein AGL75
Swissprot	Q9FLL0	1e-115	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	D7MJI6	1e-123	D7MJI6_ARALL; Predicted protein
STRING	XP_010481140.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	1e-108	AGAMOUS-like 75

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]