PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g092100.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 834aa    MW: 91138.7 Da    PI: 6.641
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g092100.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-181674357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Csa17g092100.2 16 KYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74
                    5679*****************************************************97 PP
2START168.25.7e-531603682205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+++d++ W + ++++++++v+ ++  g+++l 
  Csa17g092100.2 160 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVAEIVKDRPSWFRECRAVDVMNVLPTAngGTIELL 253
                     7899******************************************************.7777777777****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     + +l+a+++l+p Rdf+ +Ry+  l++g++v++++S+ s+q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl++ +++++lr+l+
  Csa17g092100.2 254 YVQLYAPTTLAPpRDFWLLRYTSVLEDGSLVVCERSLKSTQNGPSmplVQNFVRAEMLPSGYLIRPCDGGGSIIHIVDHMDLEACSVPEVLRPLY 348
                     ********************************************999999********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s  + ++kt++a+l+++++
  Csa17g092100.2 349 ESPKVLAQKTTMAALRQLKQ 368
                     ****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.2E-151379IPR001356Homeobox domain
SuperFamilySSF466895.13E-171579IPR009057Homeodomain-like
CDDcd000869.22E-171676No hitNo description
PfamPF000462.9E-161774IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-181874IPR009057Homeodomain-like
PROSITE profilePS5007115.2731975IPR001356Homeobox domain
CDDcd146861.14E-668107No hitNo description
PROSITE profilePS5084825.559150378IPR002913START domain
CDDcd088753.10E-73154370No hitNo description
Gene3DG3DSA:3.30.530.202.4E-20159345IPR023393START-like domain
SMARTSM002343.2E-38159369IPR002913START domain
SuperFamilySSF559617.83E-36159371No hitNo description
PfamPF018521.4E-50160368IPR002913START domain
PfamPF086701.7E-42692814IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MAMSCKDKLG CLDNGKYVRY TPEQVEALER LYHECPKPSS IRRQQLIREC PILSNIEPKQ  60
IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV HENSYFRQHT  120
HNPSLPAKDT SCESVVTSGQ HQLASQNPPR DASPAGLLSI AEETLAEFLS KATGTAVEWV  180
QMPGMKPGPD SIGIIAISHG CTGVAARACG LVGLEPTRVA EIVKDRPSWF RECRAVDVMN  240
VLPTANGGTI ELLYVQLYAP TTLAPPRDFW LLRYTSVLED GSLVVCERSL KSTQNGPSMP  300
LVQNFVRAEM LPSGYLIRPC DGGGSIIHIV DHMDLEACSV PEVLRPLYES PKVLAQKTTM  360
AALRQLKQIA QEVTQTNSSV NGWGRRPAAL RALSQRLSRG FNEAVNGFTD EGWSVIGDSM  420
DDVTITVNSS PDKLMGLNLT FSNGFAPVSS VVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADNNIDAYLA AAVKVGPCSA RVGGFGGQVI LPLAHTIEHE EFMEVIKLEG LGHSPEDAIV  540
PRDIFLLQLC SGMDESAVGT CAELIFAPID ASFADDAPLL PSGFRIIPLD SAKEVSSPNR  600
TLDLASALEI GSAGTKASTD QSGNSTCARS VMTIAFEFGI ESHMQEHVAS MARQYVRGII  660
SSVQRVALAL SPSHISSQVG LRTPLGTPEA QTLSRWICQS YRGYMGVELL KSNSEGNESV  720
LKNLWHHTDA IICCSMKALP VFTFANQAGL DMLETTLVAL QDISLEKIFD DNGRKTLCSE  780
FPQIMQQGFA CLQGGICLSS MGRPVSYERA VAWKTKLLPF GCILVLLDVA VNT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g092100.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4394490.0AJ439449.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein (ATHB-15 gene).
GenBankAY0605560.0AY060556.1 Arabidopsis thaliana At1g52150/F5F19_21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010479714.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLR0IKW40.0R0IKW4_9BRAS; Uncharacterized protein
STRINGXP_010479714.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]